chr12 : 45,914,112 45,914,484
372 bp 68 TFs 0 linked genes
This 372 bp open chromatin element has no linked target genes and is bound by 68 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:45,909,112 – 45,919,484
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HeLa_EGF GSE40632.AFF4.HeLa_EGF 147 bp overlap
ARID2 3 datasets
ChIP Aska-SS GSE108025.ARID2.Aska-SS 367 bp overlap
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 309 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 259 bp overlap
BCL3 2 datasets
ChIP A-549 ENCSR000BQH.BCL3.A-549 278 bp overlap
ChIP GM12878 ENCSR000BNQ.BCL3.GM12878 172 bp overlap
BCL6 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE68349.BCL6.B-cell_GERMINAL_CENTER 156 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 372 bp overlap
BHLHE40 2 datasets
ChIP IMR-90 ENCFF312JYK 285 bp overlap
ChIP IMR-90 ENCSR957KYB.BHLHE40.IMR-90 175 bp overlap
BRD4 3 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 372 bp overlap
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 237 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 194 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 201 bp overlap
CIITA 1 dataset
ChIP Raji_AB1 GSE52941.CIITA.Raji_AB1 336 bp overlap
CREB1 3 datasets
ChIP GM12878 ENCFF870CVH 322 bp overlap
ChIP GM12878 ENCSR000BUF.CREB1.GM12878 310 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 161 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 229 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF335XTP 172 bp overlap
ChIP BLaER1 ENCFF896HSY 276 bp overlap
DEK 1 dataset
ChIP HeLa-S3 ENCSR219MKK.DEK.HeLa-S3 86 bp overlap
DPF2 1 dataset
ChIP SCCOHT-1 GSE117734.DPF2.SCCOHT-1 335 bp overlap
EBF1 2 datasets
ChIP LCL GSE75503.EBF1.LCL 191 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 254 bp overlap
EMX1 1 dataset
ChIP WTC11 ENCFF692RZJ 372 bp overlap
ESR1 2 datasets
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 195 bp overlap
ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 146 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 164 bp overlap
EZH1 1 dataset
ChIP ProEs GSE59087.EZH1.ProEs 228 bp overlap
EZH2 2 datasets
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 132 bp overlap
ChIP WSU-DLCL2 GSE45982.EZH2.WSU-DLCL2 147 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_GATA4 GSE90454.FOXA2.BJ1-hTERT_GATA4 185 bp overlap
GABPA 1 dataset
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 167 bp overlap
GATA1 1 dataset
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 190 bp overlap
GATA4 2 datasets
ChIP A-549 GSE85002.GATA4.A-549 220 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 208 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 206 bp overlap
HIF1A 1 dataset
ChIP PC-3_hypoxia_siCtrl GSE106305.HIF1A.PC-3_hypoxia_siCtrl 302 bp overlap
HMBOX1 3 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 372 bp overlap
ChIP K562 ENCFF055GAZ 149 bp overlap
ChIP K562 ENCFF317JJX 151 bp overlap
IFNA1 2 datasets
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 306 bp overlap
ChIP Huh-7_NS5 GSE110511.IFNA1.Huh-7_NS5 183 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 197 bp overlap
JUN 2 datasets
ChIP 786-O GSE86092.JUN.786-O 208 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUN.MCF10A-Er-Src_EtOH 162 bp overlap
KMT2A 1 dataset
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 280 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 214 bp overlap
MED25 1 dataset
ChIP PC-3_FLAG GSE133445.MED25.PC-3_FLAG 67 bp overlap
MEF2B 1 dataset
ChIP tonsil GSE110682.MEF2B.tonsil 197 bp overlap
MTA3 1 dataset
ChIP GM12878 ENCSR000BRH.MTA3.GM12878 246 bp overlap
MYBL2 2 datasets
ChIP MCF-10A_DOX GSE115787.MYBL2.MCF-10A_DOX 224 bp overlap
ChIP MCF-10A_ctrl GSE115787.MYBL2.MCF-10A_ctrl 224 bp overlap
MYC 2 datasets
ChIP CC-LP-1 GSE124430.MYC.CC-LP-1 153 bp overlap
ChIP CD34 GSE85488.MYC.CD34 173 bp overlap
MYF5 1 dataset
ChIP Rh18 GSE84628.MYF5.Rh18 214 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 178 bp overlap
PAX5 1 dataset
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 100 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 247 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 263 bp overlap
POLR2A 9 datasets
ChIP GM12891 ENCFF379FCI 372 bp overlap
ChIP GM12892 ENCFF245LYF 372 bp overlap
ChIP SK-N-MC ENCFF088IVG 272 bp overlap
ChIP SK-N-MC ENCFF088IVG 372 bp overlap
ChIP SK-N-SH ENCFF683PFH 294 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 185 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 325 bp overlap
ChIP sigmoid colon ENCFF748YVT 372 bp overlap
ChIP spleen ENCFF044PYR 372 bp overlap
POLR2G 3 datasets
ChIP HepG2 ENCFF241AEG 372 bp overlap
ChIP HepG2 ENCFF241AEG 372 bp overlap
ChIP HepG2 ENCFF508UTS 372 bp overlap
RAD21 1 dataset
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 170 bp overlap
RBPJ 1 dataset
ChIP NHEK GSE29498.RBPJ.NHEK 114 bp overlap
REL 1 dataset
ChIP Ramos GSE139810.REL.Ramos 128 bp overlap
RELA 1 dataset
ChIP MCF-7_IL1b_45m GSE67295.RELA.MCF-7_IL1b_45m 144 bp overlap
RFX5 18 datasets
ChIP A-549 ENCSR064LJN.RFX5.A-549 370 bp overlap
ChIP A549 ENCFF220PEX 353 bp overlap
ChIP GM12878 ENCFF768MIX 290 bp overlap
ChIP GM12878 ENCSR000DZW.RFX5.GM12878 176 bp overlap
ChIP H1 ENCFF605EGG 336 bp overlap
ChIP HeLa-S3 ENCFF703XPB 142 bp overlap
ChIP HeLa-S3 ENCSR000ECX.RFX5.HeLa-S3 258 bp overlap
ChIP Hep-G2 ENCSR000EEA.RFX5.Hep-G2 173 bp overlap
ChIP HepG2 ENCFF065UQI 337 bp overlap
ChIP IMR-90 ENCFF886KPO 285 bp overlap
ChIP IMR-90 ENCSR000EFD.RFX5.IMR-90 372 bp overlap
ChIP K-562 ENCSR000EGO.RFX5.K-562 146 bp overlap
ChIP K562 ENCFF734TCX 289 bp overlap
ChIP MCF-7 ENCFF983ILY 269 bp overlap
ChIP MCF-7 ENCSR924TVL.RFX5.MCF-7 372 bp overlap
ChIP SK-N-SH ENCFF755HLO 108 bp overlap
ChIP SK-N-SH ENCSR000EHY.RFX5.SK-N-SH 239 bp overlap
ChIP WA01 ENCSR000ECF.RFX5.WA01 294 bp overlap
RPA2_phospho 3 datasets
ChIP HeLa GSE108172.RPA2_phospho.HeLa 337 bp overlap
ChIP HeLa_shASF GSE108172.RPA2_phospho.HeLa_shASF 212 bp overlap
ChIP HeLa_shTOP1 GSE108172.RPA2_phospho.HeLa_shTOP1 372 bp overlap
RUNX1 2 datasets
ChIP MV4-11 GSE79899.RUNX1.MV4-11 224 bp overlap
ChIP THP-1 GSE79899.RUNX1.THP-1 215 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 253 bp overlap
SIX5 1 dataset
ChIP GM12878 ENCSR000BJE.SIX5.GM12878 117 bp overlap
SMAD3 2 datasets
ChIP SUM159PT GSE130364.SMAD3.SUM159PT 114 bp overlap
ChIP SUM159PT GSE130364.SMAD3.SUM159PT 98 bp overlap
SMARCA4 1 dataset
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 84 bp overlap
SMARCB1 3 datasets
ChIP proliferating-human-fibroblast GSE131711.SMARCB1.proliferating-human-fibroblast 158 bp overlap
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 191 bp overlap
ChIP proliferating-human-fibroblast_ASO_LINC GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_LINC 182 bp overlap
SMARCC1 1 dataset
ChIP SCCOHT-1 GSE117734.SMARCC1.SCCOHT-1 270 bp overlap
SUPT5H 5 datasets
ChIP HCT-116_DMSO GSE138548.SUPT5H.HCT-116_DMSO 207 bp overlap
ChIP HCT-116_Nut3 GSE138548.SUPT5H.HCT-116_Nut3 197 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 153 bp overlap
ChIP HeLa GSE125534.SUPT5H.HeLa 293 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 251 bp overlap
TAL1 1 dataset
ChIP ProEs GSE59087.TAL1.ProEs 108 bp overlap
TCF4 1 dataset
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 165 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 206 bp overlap
ZFP37 1 dataset
ChIP HEK293 ENCSR365GRX.ZFP37.HEK293 226 bp overlap
ZNF10 2 datasets
ChIP HEK293 ENCFF611ZJI 97 bp overlap
ChIP HEK293 ENCSR019WUS.ZNF10.HEK293 314 bp overlap
ZNF134 1 dataset
ChIP HEK293 GSE76494.ZNF134.HEK293 226 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 188 bp overlap