chr12 : 44,581,941 44,582,364
423 bp 53 TFs 0 linked genes
This 423 bp open chromatin element has no linked target genes and is bound by 53 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:44,576,941 – 44,587,364
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 336 bp overlap
BCL11A 2 datasets
ChIP WA01 ENCSR000BIP.BCL11A.WA01 164 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 141 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 262 bp overlap
CHD7 4 datasets
ChIP H1 ENCFF126NLU 213 bp overlap
ChIP H1 ENCFF126NLU 219 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 186 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 423 bp overlap
CRY1 1 dataset
ChIP U2OS_cordycepin GSE130506.CRY1.U2OS_cordycepin 206 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 390 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 170 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 85 bp overlap
EP300 4 datasets
ChIP H1 ENCFF927IYK 260 bp overlap
ChIP Ishikawa ENCFF364ZWT 198 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 342 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 223 bp overlap
ESR1 6 datasets
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 130 bp overlap
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 187 bp overlap
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 286 bp overlap
ChIP Ishikawa_M1-66 GSE147141.ESR1.Ishikawa_M1-66 259 bp overlap
ChIP Ishikawa_M1-9-1 GSE147141.ESR1.Ishikawa_M1-9-1 312 bp overlap
ChIP Ishikawa_M2-3 GSE147141.ESR1.Ishikawa_M2-3 200 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 233 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 300 bp overlap
FOXM1 2 datasets
ChIP Ishikawa ENCFF578VDD 179 bp overlap
ChIP Ishikawa ENCSR000BUS.FOXM1.Ishikawa 239 bp overlap
GATA6 1 dataset
ChIP DE_D1 S14-DE-d1-GATA6-exp1 256 bp overlap
JUN 5 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 423 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 144 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 423 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 423 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 326 bp overlap
KLF4 2 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 148 bp overlap
ChIP HAP1 GSE130417.KLF4.HAP1 170 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 394 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_12h DE_12h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_12h DE_12h-MEIS3_MA0775.2 7 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 374 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 250 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 195 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 423 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 371 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 223 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 398 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 408 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 405 bp overlap
ChIP hESC GSE20650.NANOG.hESC 262 bp overlap
ChIP hESC GSE18292.NANOG.hESC 113 bp overlap
NFIC 1 dataset
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 136 bp overlap
NIPBL 2 datasets
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 307 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 194 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 72 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 177 bp overlap
POU5F1 9 datasets
ChIP GM23338 ENCFF333SNB 194 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 375 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 234 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 188 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 221 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 331 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 313 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 159 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 157 bp overlap
PRDM9 2 datasets
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
Prdm14 1 dataset
Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap
RAD21 6 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 292 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 423 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 383 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 322 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 273 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 189 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 152 bp overlap
RBPJ 2 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 320 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 298 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 280 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 157 bp overlap
SMARCA2 1 dataset
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 294 bp overlap
SMARCA4 9 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 184 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 155 bp overlap
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 253 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 362 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 423 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 423 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 158 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 248 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 281 bp overlap
SMARCB1 3 datasets
ChIP RMG-I_ARID1A-KO GSE120058.SMARCB1.RMG-I_ARID1A-KO 200 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 152 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 248 bp overlap
SMARCC1 5 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 224 bp overlap
ChIP BT-16_Dox GSE71504.SMARCC1.BT-16_Dox 161 bp overlap
ChIP DE_D1 S10-DE-d1-BAF155-exp1 143 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 254 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 267 bp overlap
SOX2 5 datasets
ChIP KYSE-70 GSE46837.SOX2.KYSE-70 193 bp overlap
ChIP NPC GSE122631.SOX2.NPC 265 bp overlap
ChIP hESC GSE18292.SOX2.hESC 68 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 223 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 176 bp overlap
SOX3 1 dataset
ChIP NPC GSE122631.SOX3.NPC 192 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 281 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 307 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 275 bp overlap
TAF1 2 datasets
ChIP Ishikawa ENCFF271ZVL 423 bp overlap
ChIP Ishikawa ENCFF271ZVL 272 bp overlap
TBP 1 dataset
ChIP hESC_2h GSE122298.TBP.hESC_2h 123 bp overlap
TCF12 2 datasets
ChIP Ishikawa ENCFF467DDW 357 bp overlap
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 423 bp overlap
TEAD1 1 dataset
ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 157 bp overlap
TEAD4 6 datasets
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 183 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 277 bp overlap
ChIP H1 ENCFF778PAX 94 bp overlap
ChIP Ishikawa ENCFF772OTG 158 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 320 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 225 bp overlap
TFAP4 1 dataset
ChIP DLD-1 GSE46935.TFAP4.DLD-1 208 bp overlap
ZFP69B 1 dataset
ChIP HEK293T GSE78099.ZFP69B.HEK293T 179 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 150 bp overlap
ZNF75A 2 datasets
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
Motif ES_0h ES_0h-ZNF75A_MA2097.1 12 bp overlap
Zfp809 2 datasets
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap