chr12 : 38,903,464 38,904,021
557 bp 49 TFs 2 linked genes
This 557 bp open chromatin element is linked to CPNE8 and CPNE8-AS1 and is bound by 49 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
CPNE8 1.6 kb Proximal Proximity
CPNE8-AS1 2.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:38,898,464 – 38,909,021
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
49 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP SEM_DMSO GSE90762.AFF1.SEM_DMSO 557 bp overlap
ASH2L 1 dataset
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 243 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 218 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 273 bp overlap
BRD4 6 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 262 bp overlap
ChIP HEK293T GSE39579.BRD4.HEK293T 76 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 97 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 557 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 476 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 256 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 300 bp overlap
ChIP K562 ENCFF673OEZ 411 bp overlap
CDK8 1 dataset
ChIP SET-2 GSE65138.CDK8.SET-2 348 bp overlap
ELF1 3 datasets
ChIP GM12878 ENCFF692SMY 457 bp overlap
ChIP GM12878 ENCSR841NDX.ELF1.GM12878 346 bp overlap
ChIP K-562 ENCSR000BMD.ELF1.K-562 173 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 522 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 557 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 557 bp overlap
ELK1 2 datasets
ChIP GM12878 ENCFF807NFQ 110 bp overlap
ChIP GM12878 ENCFF807NFQ 315 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 445 bp overlap
ChIP neural cell ENCFF442QNK 222 bp overlap
ERG 5 datasets
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 137 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 239 bp overlap
ChIP aortic-endothelial-cell_D16 GSE139377.ERG.aortic-endothelial-cell_D16 184 bp overlap
ChIP aortic-endothelial-cell_D49 GSE139377.ERG.aortic-endothelial-cell_D49 167 bp overlap
ChIP aortic-endothelial-cell_D5 GSE139377.ERG.aortic-endothelial-cell_D5 178 bp overlap
ETV1 2 datasets
ChIP GIST GSE22441.ETV1.GIST 107 bp overlap
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 284 bp overlap
FLI1 2 datasets
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 158 bp overlap
ChIP SEM GSE117864.FLI1.SEM 183 bp overlap
GATA1 4 datasets
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 128 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 224 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 138 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 365 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 425 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-2 325 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 265 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 175 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 236 bp overlap
ChIP DE DE-GATA6-2 274 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 232 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 417 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 270 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 387 bp overlap
KMT2A 4 datasets
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 209 bp overlap
ChIP MV4-11 GSE83671.KMT2A.MV4-11 557 bp overlap
ChIP OCI-AML-3_DMSO GSE129636.KMT2A.OCI-AML-3_DMSO 381 bp overlap
ChIP THP-1 GSE83671.KMT2A.THP-1 209 bp overlap
LMO2 1 dataset
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 184 bp overlap
MEIS1 1 dataset
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 262 bp overlap
MEN1 4 datasets
ChIP MOLM-13 GSE149183.MEN1.MOLM-13 287 bp overlap
ChIP OCI-AML-3_DMSO GSE129636.MEN1.OCI-AML-3_DMSO 230 bp overlap
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 159 bp overlap
ChIP SEM GSE83671.MEN1.SEM 166 bp overlap
PHIP 3 datasets
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 127 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 116 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 55 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 197 bp overlap
RAD21 1 dataset
ChIP neural ENCSR198ZYJ.RAD21.neural 266 bp overlap
RELA 7 datasets
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 142 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 172 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 314 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 211 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 414 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 198 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 177 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 397 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 366 bp overlap
ChIP neural cell ENCFF882LXX 291 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 360 bp overlap
SMAD2-3 2 datasets
ChIP HGrC1_WT-TGF GSE138496.SMAD2-3.HGrC1_WT-TGF 125 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 214 bp overlap
SMARCA4 1 dataset
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 547 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 233 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 164 bp overlap
TAL1 2 datasets
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 392 bp overlap
ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 188 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF265CEM 127 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 154 bp overlap
ZNF10 2 datasets
ChIP HEK293 ENCFF611ZJI 319 bp overlap
ChIP HEK293 ENCSR019WUS.ZNF10.HEK293 312 bp overlap
ZNF140 1 dataset
ChIP HEK293 GSE76494.ZNF140.HEK293 184 bp overlap
ZNF496 1 dataset
ChIP HEK293T GSE78099.ZNF496.HEK293T 58 bp overlap
ZNF716 1 dataset
ChIP HEK293T GSE78099.ZNF716.HEK293T 314 bp overlap