chr12 : 1,720,538 1,721,023
485 bp 64 TFs 4 linked genes
This 485 bp open chromatin element is linked to 4 target genes and is bound by 64 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
ADIPOR2 29.7 kb Distal Multiome
FBXL14 126.2 kb Distal Multiome
WNT5B 190.9 kb Distal Multiome
DCP1B 283.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:1,715,538 – 1,726,023
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
64 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 190 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 269 bp overlap
FOXA1 1 dataset
Motif DE_24h DE_24h-FOXA1_MA0148.5 8 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 453 bp overlap
ChIP DE DE-FOXA2-2 449 bp overlap
Motif DE_24h DE_24h-FOXA2_MA0047.4 8 bp overlap
FOXA3 1 dataset
Motif DE_24h DE_24h-FOXA3_MA1683.2 7 bp overlap
FOXD1 1 dataset
Motif DE_24h DE_24h-FOXD1_MA0031.2 7 bp overlap
FOXG1 1 dataset
Motif DE_24h DE_24h-FOXG1_MA0613.1 8 bp overlap
FOXI1 1 dataset
Motif DE_24h DE_24h-FOXI1_MA0042.2 7 bp overlap
FOXK1 1 dataset
Motif DE_24h DE_24h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_24h DE_24h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_24h DE_24h-FOXL1_MA0033.2 7 bp overlap
FOXO4 1 dataset
Motif DE_24h DE_24h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_24h DE_24h-FOXO6_MA0849.1 7 bp overlap
FOXP1 1 dataset
Motif DE_24h DE_24h-FOXP1_MA0481.4 7 bp overlap
FOXP2 1 dataset
Motif DE_24h DE_24h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_24h DE_24h-FOXP3_MA0850.1 7 bp overlap
FOXP4 1 dataset
Motif DE_24h DE_24h-FOXP4_MA2117.1 7 bp overlap
FOXS1 1 dataset
Motif DE_24h DE_24h-FOXS1_MA2118.1 8 bp overlap
Foxf1 1 dataset
Motif DE_24h DE_24h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_24h DE_24h-Foxj2_MA0614.1 8 bp overlap
Foxj3 1 dataset
Motif DE_24h DE_24h-Foxj3_MA0851.2 9 bp overlap
Foxl2 1 dataset
Motif DE_24h DE_24h-Foxl2_MA1607.2 10 bp overlap
Foxo1 1 dataset
Motif DE_24h DE_24h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_24h DE_24h-Foxo3_MA0157.4 7 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 485 bp overlap
ChIP DE DE-GATA4-2 485 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 449 bp overlap
ChIP DE DE-GATA6-2 485 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 423 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 485 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 485 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 361 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 478 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 451 bp overlap
GRHL2 1 dataset
Motif DE_24h DE_24h-GRHL2_MA1105.3 8 bp overlap
HAND2 1 dataset
Motif DE_24h DE_24h-HAND2_MA1638.2 6 bp overlap
HDAC2 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 205 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 325 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 263 bp overlap
MAZ 1 dataset
Motif DE_24h DE_24h-MAZ_MA1522.2 8 bp overlap
MZF1 2 datasets
ChIP HEK293 ENCFF683ZWN 214 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 381 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 339 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 411 bp overlap
Nr2e3 1 dataset
Motif DE_24h DE_24h-Nr2e3_MA0164.2 6 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCFF875BDB 340 bp overlap
PATZ1 1 dataset
Motif DE_24h DE_24h-PATZ1_MA1961.2 11 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF833NJP 376 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 407 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 285 bp overlap
Plagl1 1 dataset
Motif DE_24h DE_24h-Plagl1_MA1615.2 8 bp overlap
RAD21 1 dataset
ChIP K-562 ENCSR000BKV.RAD21.K-562 117 bp overlap
RBM22 3 datasets
ChIP HepG2 ENCFF292RVQ 172 bp overlap
ChIP HepG2 ENCFF561IAJ 363 bp overlap
ChIP HepG2 ENCFF561IAJ 117 bp overlap
Rhox11 1 dataset
Motif DE_24h DE_24h-Rhox11_MA0629.2 9 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 479 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 435 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 270 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 269 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 340 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 377 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 485 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 414 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S10-DE-d1-BAF155-exp1 337 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 419 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 393 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 161 bp overlap
TRIM28 2 datasets
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 304 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 260 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 151 bp overlap
ZIC1 1 dataset
Motif DE_24h DE_24h-ZIC1_MA0696.1 14 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 287 bp overlap
ZIC4 1 dataset
Motif DE_24h DE_24h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_24h DE_24h-ZIC5_MA1584.2 15 bp overlap
ZNF148 1 dataset
Motif DE_24h DE_24h-ZNF148_MA1653.2 10 bp overlap
ZNF257 1 dataset
Motif DE_24h DE_24h-ZNF257_MA1710.2 10 bp overlap
ZNF362 1 dataset
ChIP HEK293 ENCFF436CGE 81 bp overlap
ZNF449 3 datasets
ChIP HEK293 ENCFF764ZIC 138 bp overlap
ChIP HEK293 ENCSR738SLS.ZNF449.HEK293 251 bp overlap
ChIP HEK293 GSE76494.ZNF449.HEK293 127 bp overlap
ZNF610 2 datasets
ChIP HEK293 ENCFF778UKJ 363 bp overlap
ChIP HEK293 ENCSR691TXI.ZNF610.HEK293 455 bp overlap
ZSCAN16 1 dataset
Motif DE_24h DE_24h-ZSCAN16_MA2100.1 18 bp overlap
Zic2 1 dataset
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_24h DE_24h-Zic3_MA0697.3 7 bp overlap