chr11 : 41,394,047 – 41,394,756
709 bp 66 TFs 1 linked gene
This 709 bp open chromatin element is linked to ENSG00000255132 and is bound by 66 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000255132 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:41,389,047 – 41,399,756
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 239 bp overlap
BCL6 1 dataset
Motif DE_12h DE_12h-BCL6_MA0463.3 13 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 709 bp overlap
DMRTA2 1 dataset
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_12h DE_12h-DUXA_MA0884.2 13 bp overlap
Dmrt1 1 dataset
Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap
EGR1 1 dataset
ChIP macrophage_D4 GSE136216.EGR1.macrophage_D4 232 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 196 bp overlap
ChIP neural cell ENCFF442QNK 253 bp overlap
ERF::SREBF2 1 dataset
Motif DE_12h DE_12h-ERFSREBF2_MA1939.2 16 bp overlap
EWSR1-FLI1 3 datasets
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 153 bp overlap
GATA6 6 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 227 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 312 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 342 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 307 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 391 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 597 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 460 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 607 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 514 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 459 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 459 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 516 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 611 bp overlap
MAZ 1 dataset
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 257 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 180 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 709 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 597 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 694 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 500 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 565 bp overlap
ChIP hESC GSE18292.NANOG.hESC 113 bp overlap
ChIP hESC GSE20650.NANOG.hESC 234 bp overlap
ChIP hESC GSE18292.NANOG.hESC 123 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NFIA 2 datasets
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
Motif ES_0h ES_0h-NFIA_MA0670.2 6 bp overlap
NFIC 2 datasets
Motif DE_12h DE_12h-NFIC_MA0161.3 7 bp overlap
Motif ES_0h ES_0h-NFIC_MA0161.3 7 bp overlap
NFIX 2 datasets
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
Motif ES_0h ES_0h-NFIX_MA0671.2 6 bp overlap
NFYA 1 dataset
Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap
NFYC 1 dataset
Motif DE_12h DE_12h-NFYC_MA1644.2 7 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
ONECUT1 1 dataset
Motif DE_12h DE_12h-ONECUT1_MA0679.3 9 bp overlap
PAX4 1 dataset
Motif DE_12h DE_12h-PAX4_MA0068.2 8 bp overlap
PHOX2A 1 dataset
Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 2 datasets
Motif DE_12h DE_12h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_12h DE_12h-PHOX2B_MA0681.3 12 bp overlap
PKNOX1 2 datasets
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
Motif ES_0h ES_0h-PKNOX1_MA0782.3 10 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 197 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU4F2 2 datasets
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 193 bp overlap
POU5F1 8 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 709 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 247 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 328 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 207 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 458 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 179 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 662 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 159 bp overlap
PROP1 2 datasets
Motif DE_12h DE_12h-PROP1_MA0715.1 11 bp overlap
Motif DE_12h DE_12h-PROP1_MA0715.1 11 bp overlap
RAD21 1 dataset
ChIP HAP1 GSE152721.RAD21.HAP1 261 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 439 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 620 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 330 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 345 bp overlap
SMARCA4 7 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 547 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 357 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 709 bp overlap
ChIP WA09 GSE105028.SMARCA4.WA09 249 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 496 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 709 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 709 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 709 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 709 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 709 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 6 datasets
ChIP HNSC GSE69479.SOX2.HNSC 709 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 135 bp overlap
ChIP hESC GSE18292.SOX2.hESC 147 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 255 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 235 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 127 bp overlap
SOX3 1 dataset
ChIP NPC GSE122631.SOX3.NPC 155 bp overlap
SREBF1 2 datasets
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
Motif DE_12h DE_12h-SREBF1_MA0829.3 10 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
STAT1 1 dataset
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
STAT3 1 dataset
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
Stat6 2 datasets
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 246 bp overlap
TEF 1 dataset
Motif DE_12h DE_12h-TEF_MA0843.2 10 bp overlap
ZBTB26 1 dataset
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 328 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 301 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF680 1 dataset
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
Huangfu Lab · Publications · Resources · Contact