chr11 : 20,609,641 – 20,610,016
375 bp 51 TFs 0 linked genes
This 375 bp open chromatin element has no linked target genes and is bound by 51 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:20,604,641 – 20,615,016
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
51 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP SEM_DMSO GSE90762.AFF1.SEM_DMSO 81 bp overlap
ARID1A 3 datasets
ChIP NGP GSE134626.ARID1A.NGP 84 bp overlap
ChIP RMG-I GSE120058.ARID1A.RMG-I 280 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 196 bp overlap
BRD2 3 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 375 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 202 bp overlap
ChIP SUM159PT_JQ1_MGSK2801 GSE116879.BRD2.SUM159PT_JQ1_MGSK2801 107 bp overlap
BRD4 6 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 212 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 246 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 186 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 243 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 172 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 375 bp overlap
CCDC6 1 dataset
ChIP HepG2 ENCFF751JSA 97 bp overlap
CDK7 1 dataset
ChIP Jurkat_DMSO GSE60027.CDK7.Jurkat_DMSO 66 bp overlap
CDK9 1 dataset
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 167 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 151 bp overlap
CREBBP 1 dataset
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 293 bp overlap
CTCF 63 datasets
ChIP 22Rv1 ENCFF466OXN 105 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 182 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 130 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 109 bp overlap
ChIP C4-2B ENCFF821XVN 242 bp overlap
ChIP CD14 ENCSR000ATN.CTCF.CD14 184 bp overlap
ChIP CD4-positive, alpha-beta T cell ENCFF277LDE 51 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 114 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 243 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 90 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 112 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 197 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 103 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 58 bp overlap
ChIP HFFc6 ENCFF005CJI 51 bp overlap
ChIP HFFc6 ENCFF005CJI 51 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 198 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 64 bp overlap
ChIP K-562 GSE92879.CTCF.K-562 107 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 58 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 102 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 72 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 103 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 187 bp overlap
ChIP Panc1 ENCFF056JQX 205 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 102 bp overlap
ChIP RWPE1 ENCFF200GQF 50 bp overlap
ChIP RWPE2 ENCFF911IEE 235 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 187 bp overlap
ChIP SLK_CTCF-KD GSE138105.CTCF.SLK_CTCF-KD 144 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 144 bp overlap
ChIP SLK_RAD21-KD GSE138105.CTCF.SLK_RAD21-KD 92 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 323 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 70 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 53 bp overlap
ChIP VCaP ENCFF858YQT 125 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 120 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 139 bp overlap
ChIP aorta_thoracic ENCSR668BTN.CTCF.aorta_thoracic 111 bp overlap
ChIP brain ENCFF163BBN 72 bp overlap
ChIP chondrocyte ENCFF134ORZ 158 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 78 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 137 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 201 bp overlap
ChIP esophagus_squamous-epithelium ENCSR838RUX.CTCF.esophagus_squamous-epithelium 66 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 302 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 375 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 162 bp overlap
ChIP lymphoblast GSE155324.CTCF.lymphoblast 176 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 313 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 74 bp overlap
ChIP natural killer cell ENCFF517SNI 87 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 53 bp overlap
ChIP neural progenitor cell ENCFF581WPG 61 bp overlap
ChIP neural progenitor cell ENCFF581WPG 61 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 73 bp overlap
ChIP plasmablast GSE142493.CTCF.plasmablast 136 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 78 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 96 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 359 bp overlap
ChIP retina_AB1-FW14 GSE86981.CTCF.retina_AB1-FW14 184 bp overlap
ChIP retina_AB1-FW16 GSE86981.CTCF.retina_AB1-FW16 81 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 72 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 260 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 100 bp overlap
ESR1 1 dataset
ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 164 bp overlap
EZH2 4 datasets
ChIP LNCaP GSE39459.EZH2.LNCaP 178 bp overlap
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 64 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 239 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 219 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 78 bp overlap
FOS 2 datasets
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 164 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 253 bp overlap
GATA1 1 dataset
ChIP erythroblast ENCFF867JAR 52 bp overlap
HIF1A 3 datasets
ChIP PC-3_hypoxia_siCtrl GSE106305.HIF1A.PC-3_hypoxia_siCtrl 265 bp overlap
ChIP RCC10 GSE101063.HIF1A.RCC10 221 bp overlap
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 148 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 375 bp overlap
JUN 2 datasets
ChIP 786-O GSE86092.JUN.786-O 134 bp overlap
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 154 bp overlap
JUNB 1 dataset
ChIP Karpas-299 GSE151413.JUNB.Karpas-299 375 bp overlap
L3MBTL2 1 dataset
ChIP K562 ENCFF320EQC 103 bp overlap
MEF2D 1 dataset
ChIP HepG2 ENCFF576WDO 63 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 142 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 361 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 345 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 222 bp overlap
PAX5 1 dataset
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 126 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 239 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 101 bp overlap
PPARG 1 dataset
ChIP HUVEC-C_DMSO_HYPO GSE50144.PPARG.HUVEC-C_DMSO_HYPO 147 bp overlap
RAD21 11 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 65 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 277 bp overlap
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 348 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 317 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 277 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 137 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 173 bp overlap
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 82 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 163 bp overlap
ChIP lymphoblast GSE155324.RAD21.lymphoblast 169 bp overlap
ChIP lymphoblast_mut GSE155324.RAD21.lymphoblast_mut 141 bp overlap
RFX5 1 dataset
ChIP MCF-7 ENCSR924TVL.RFX5.MCF-7 118 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 345 bp overlap
SMARCA4 4 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 269 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 309 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 80 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 193 bp overlap
SMARCC1 1 dataset
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 343 bp overlap
SMC1 2 datasets
ChIP DKO GSE131606.SMC1.DKO 263 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.SMC1.HAP1_WaplKO-33_SCC4KO 323 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 296 bp overlap
SMC3 2 datasets
ChIP GP5D GSE51234.SMC3.GP5D 87 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 61 bp overlap
SS18 1 dataset
ChIP SYO-1 GSE108025.SS18.SYO-1 64 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 115 bp overlap
TAF1 1 dataset
ChIP neural cell ENCFF468SPD 68 bp overlap
TEAD1 1 dataset
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 306 bp overlap
TEAD4 1 dataset
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 307 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 83 bp overlap
ZFP91 1 dataset
ChIP HepG2 ENCFF012CME 68 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 159 bp overlap
ZNF221 1 dataset
ChIP HepG2 ENCFF374BUN 61 bp overlap
ZNF350 1 dataset
ChIP HepG2 ENCFF595LWL 71 bp overlap
ZNF501 1 dataset
ChIP HepG2 ENCFF879XZR 118 bp overlap
ZNF518A 1 dataset
ChIP HEK293 ENCFF892ULS 74 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 230 bp overlap
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