chr10 : 66,926,444 – 66,926,574

130 bp 58 TFs 1 linked gene

This 130 bp open chromatin element is linked to LRRTM3 and is bound by 58 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
LRRTM3		409 bp	At TSS	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

58 transcription factors

Atf3 1 dataset

Motif DE_12h DE_12h-Atf3_MA1988.2 7 bp overlap

BACH1 1 dataset

Motif DE_12h DE_12h-BACH1_MA1633.2 9 bp overlap

BACH2 1 dataset

Motif DE_12h DE_12h-BACH2_MA1101.3 11 bp overlap

BATF 1 dataset

Motif DE_12h DE_12h-BATF_MA1634.2 7 bp overlap

BATF3 1 dataset

Motif DE_12h DE_12h-BATF3_MA0835.3 7 bp overlap

BATF::JUN 1 dataset

Motif DE_12h DE_12h-BATFJUN_MA0462.3 7 bp overlap

BCOR 1 dataset

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 86 bp overlap

BHLHE22 2 datasets

Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap

Motif ES_0h ES_0h-BHLHE22_MA1635.2 6 bp overlap

BNC2 1 dataset

Motif DE_12h DE_12h-BNC2_MA1928.2 7 bp overlap

BRD4 1 dataset

ChIP HAP1 GSE108387.BRD4.HAP1 130 bp overlap

CBX4 1 dataset

ChIP HEK293T GSE53495.CBX4.HEK293T 130 bp overlap

CBX7 1 dataset

ChIP hESC GSE133412.CBX7.hESC 130 bp overlap

CTBP2 1 dataset

ChIP WA01 ENCSR000EUO.CTBP2.WA01 130 bp overlap

CTCF 5 datasets

ChIP GM23338 ENCFF832KWE 68 bp overlap

ChIP HT-1080 GSE135580.CTCF.HT-1080 127 bp overlap

ChIP body of pancreas ENCFF021LNP 53 bp overlap

ChIP hESC_D15 GSE116862.CTCF.hESC_D15 89 bp overlap

ChIP mesothelial cell of epicardium ENCFF427RFE 59 bp overlap

ESR2 1 dataset

Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap

EZH2 3 datasets

ChIP A-1847 GSE95643.EZH2.A-1847 124 bp overlap

ChIP A-673 ENCSR179SAO.EZH2.A-673 130 bp overlap

ChIP DOHH2 ENCFF528GDC 86 bp overlap

FOS 1 dataset

Motif DE_12h DE_12h-FOS_MA0476.2 8 bp overlap

FOS::JUN 1 dataset

Motif DE_12h DE_12h-FOSJUN_MA0099.4 9 bp overlap

FOS::JUNB 1 dataset

Motif DE_12h DE_12h-FOSJUNB_MA1134.2 9 bp overlap

FOS::JUND 1 dataset

Motif DE_12h DE_12h-FOSJUND_MA1141.2 9 bp overlap

FOSB::JUNB 1 dataset

Motif DE_12h DE_12h-FOSBJUNB_MA1135.2 9 bp overlap

FOSL1 1 dataset

Motif DE_12h DE_12h-FOSL1_MA0477.3 9 bp overlap

FOSL1::JUN 1 dataset

Motif DE_12h DE_12h-FOSL1JUN_MA1128.2 9 bp overlap

FOSL2 1 dataset

Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap

FOSL2::JUN 1 dataset

Motif DE_12h DE_12h-FOSL2JUN_MA1130.2 9 bp overlap

FOSL2::JUNB 1 dataset

Motif DE_12h DE_12h-FOSL2JUNB_MA1138.2 9 bp overlap

FOSL2::JUND 1 dataset

Motif DE_12h DE_12h-FOSL2JUND_MA1144.2 9 bp overlap

HDAC2 1 dataset

ChIP WA01 ENCSR000AVB.HDAC2.WA01 113 bp overlap

JUN::JUNB 1 dataset

Motif DE_12h DE_12h-JUNJUNB_MA1132.2 8 bp overlap

JUNB 1 dataset

Motif DE_12h DE_12h-JUNB_MA0490.3 9 bp overlap

JUND 1 dataset

Motif DE_12h DE_12h-JUND_MA0491.3 9 bp overlap

Jun 1 dataset

Motif DE_12h DE_12h-Jun_MA0489.3 8 bp overlap

KLF9 1 dataset

ChIP GBM1A GSE62211.KLF9.GBM1A 55 bp overlap

MEIS1 2 datasets

Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap

MEIS2 1 dataset

Motif ES_0h ES_0h-MEIS2_MA0774.1 8 bp overlap

MEIS3 1 dataset

Motif ES_0h ES_0h-MEIS3_MA0775.2 7 bp overlap

MYB 1 dataset

Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap

MYOD1 4 datasets

ChIP RD GSE137168.MYOD1.RD 130 bp overlap

ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 130 bp overlap

ChIP myoblast GSE50413.MYOD1.myoblast 130 bp overlap

ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 130 bp overlap

Neurod2 2 datasets

Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap

Motif ES_0h ES_0h-Neurod2_MA1993.2 6 bp overlap

Olig2 2 datasets

Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap

Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap

PCGF1 1 dataset

ChIP WA01 GSE104690.PCGF1.WA01 115 bp overlap

PDX1 1 dataset

ChIP islet ERP001456.PDX1.islet 98 bp overlap

PHIP 1 dataset

ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 60 bp overlap

POU5F1 1 dataset

ChIP HUES-8 GSE109524.POU5F1.HUES-8 99 bp overlap

Plagl1 1 dataset

Motif ES_0h ES_0h-Plagl1_MA1615.2 8 bp overlap

RAD21 2 datasets

ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 130 bp overlap

ChIP neural ENCSR198ZYJ.RAD21.neural 130 bp overlap

RBBP5 1 dataset

ChIP H1 ENCFF905HFL 130 bp overlap

RNF2 4 datasets

ChIP A-549 ENCSR798EGJ.RNF2.A-549 130 bp overlap

ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 130 bp overlap

ChIP WA09 GSE105028.RNF2.WA09 130 bp overlap

ChIP fibroblast GSE139053.RNF2.fibroblast 62 bp overlap

SAP30 2 datasets

ChIP H1 ENCFF149IOE 130 bp overlap

ChIP WA01 ENCSR000ATR.SAP30.WA01 130 bp overlap

SIN3A 3 datasets

ChIP H1 ENCFF896IJG 130 bp overlap

ChIP WA01 ENCSR000BIS.SIN3A.WA01 130 bp overlap

ChIP WA01 ENCSR000EBO.SIN3A.WA01 130 bp overlap

SMARCA4 1 dataset

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 130 bp overlap

SOX2 1 dataset

ChIP HNSC GSE69479.SOX2.HNSC 125 bp overlap

SUZ12 2 datasets

ChIP HEK293T_PCGF1356fl GSE119618.SUZ12.HEK293T_PCGF1356fl 130 bp overlap

ChIP HEK293T_PCGF135fl GSE119618.SUZ12.HEK293T_PCGF135fl 130 bp overlap

TRIM28 1 dataset

ChIP HEK293 ENCFF582MWI 130 bp overlap

Tcf12 2 datasets

Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap

Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap

Twist2 2 datasets

Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap

Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap

ZBTB48 2 datasets

ChIP HEK293 ENCFF809BPK 81 bp overlap

ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 130 bp overlap

ZNF317 2 datasets

ChIP HEK293 GSE76494.ZNF317.HEK293 125 bp overlap

ChIP WTC11 ENCFF537KXI 130 bp overlap