chr10 : 61,986,079 61,987,271
1,192 bp 83 TFs 2 linked genes
This 1.2 kb open chromatin element is linked to ARID5B and RTKN2 and is bound by 83 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ARID5B 85.0 kb Distal Multiome
RTKN2 282.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:61,981,079 – 61,992,271
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
83 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 225 bp overlap
ARID2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 618 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 281 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 749 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 118 bp overlap
BCL6 2 datasets
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 169 bp overlap
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 268 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 273 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 175 bp overlap
BRD4 9 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 219 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 654 bp overlap
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 165 bp overlap
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 380 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 461 bp overlap
ChIP CLL_patient4_4h_CpG GSE109411.BRD4.CLL_patient4_4h_CpG 195 bp overlap
ChIP HAP1 GSE108387.BRD4.HAP1 1010 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 216 bp overlap
ChIP hESC GSE33281.BRD4.hESC 67 bp overlap
CDK9 1 dataset
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 167 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 363 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 134 bp overlap
DPF2 2 datasets
ChIP BIN-67 GSE117734.DPF2.BIN-67 351 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 424 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
E2F6 2 datasets
ChIP WA01 ENCSR000BSI.E2F6.WA01 108 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 119 bp overlap
EP300 1 dataset
ChIP hESC GSE17917.EP300.hESC 293 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 120 bp overlap
FOXP2 1 dataset
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
GLIS2 1 dataset
ChIP HCT-116_5FU GSE125927.GLIS2.HCT-116_5FU 249 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 390 bp overlap
HOXD10 1 dataset
Motif DE_12h DE_12h-HOXD10_MA1506.2 10 bp overlap
Hoxd13 1 dataset
Motif DE_12h DE_12h-Hoxd13_MA0909.4 7 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 371 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 224 bp overlap
JUN 2 datasets
ChIP ESC S34-ESC-d0-JUN-exp2 310 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 424 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 145 bp overlap
KLF4 3 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 114 bp overlap
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 129 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 204 bp overlap
KMT2C 1 dataset
ChIP BIN-67_ctrl GSE117734.KMT2C.BIN-67_ctrl 1023 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 168 bp overlap
MAF1 1 dataset
ChIP THP-1_monocytes GSE96800.MAF1.THP-1_monocytes 141 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 365 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 1004 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 600 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 717 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 530 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 209 bp overlap
ChIP hESC GSE18292.NANOG.hESC 403 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 210 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIC 1 dataset
Motif DE_12h DE_12h-NFIC_MA0161.3 7 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
NFYB 1 dataset
Motif DE_12h DE_12h-NFYB_MA0502.3 9 bp overlap
NIPBL 4 datasets
ChIP hESC GSE64758.NIPBL.hESC 359 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 366 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 399 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 192 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Nr2e1 1 dataset
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
OSR2 1 dataset
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 224 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 278 bp overlap
PML 2 datasets
ChIP K-562 ENCSR000BQY.PML.K-562 245 bp overlap
ChIP K562 ENCFF801LKH 361 bp overlap
POLR2A 7 datasets
ChIP GM12878 ENCFF263VRI 476 bp overlap
ChIP GM12878 ENCFF263VRI 271 bp overlap
ChIP GM12892 ENCFF245LYF 391 bp overlap
ChIP GM19099 ENCFF726IBN 430 bp overlap
ChIP GM19099 ENCFF726IBN 176 bp overlap
ChIP K562 ENCFF262YXJ 349 bp overlap
ChIP Raji ENCFF613VGX 365 bp overlap
POU5F1 9 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 300 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 1049 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 440 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 976 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 245 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 569 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 362 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 514 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RAD21 1 dataset
ChIP HAP1 GSE152721.RAD21.HAP1 254 bp overlap
RARA 1 dataset
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 426 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 391 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 204 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 390 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 317 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 335 bp overlap
SMAD3 3 datasets
ChIP BG03 GSE21614.SMAD3.BG03 192 bp overlap
ChIP BG03 GSE21614.SMAD3.BG03 163 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 139 bp overlap
SMAD5 2 datasets
ChIP K-562 ENCSR000FCD.SMAD5.K-562 223 bp overlap
ChIP K562 ENCFF941FJJ 322 bp overlap
SMARCA4 7 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 206 bp overlap
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 265 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 237 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 345 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 642 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 513 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 845 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 404 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 737 bp overlap
SMARCC1 9 datasets
ChIP BIN-67 GSE117734.SMARCC1.BIN-67 453 bp overlap
ChIP BIN-67_ctrl GSE117734.SMARCC1.BIN-67_ctrl 287 bp overlap
ChIP BIN-67_ctrl GSE117734.SMARCC1.BIN-67_ctrl 270 bp overlap
ChIP BIN-67_ctrl GSE117734.SMARCC1.BIN-67_ctrl 75 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 264 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 204 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 299 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 358 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 646 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 263 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 538 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
SS18 3 datasets
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 232 bp overlap
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 445 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 424 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
TAF7 2 datasets
ChIP K-562 ENCSR000BNM.TAF7.K-562 98 bp overlap
ChIP K562 ENCFF461SFY 258 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 324 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 244 bp overlap
VEZF1 1 dataset
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 215 bp overlap
ZNF184 1 dataset
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ZNF281 1 dataset
ChIP WTC11 ENCFF551GAV 377 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 322 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 146 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 99 bp overlap
ZNF582 1 dataset
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
ZNF687 1 dataset
ChIP GM12878 ENCFF233SGE 373 bp overlap
ZSCAN31 1 dataset
Motif DE_12h DE_12h-ZSCAN31_MA1722.2 18 bp overlap