chr9 : 98,792,170 98,792,795
625 bp 57 TFs 3 linked genes
This 625 bp open chromatin element is linked to ANKS6, GALNT12, and GABBR2 and is bound by 57 transcription factors.
Linked Genes
3 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
ANKS6 3.7 kb Proximal Proximity
GALNT12 15.0 kb Distal Multiome
GABBR2 85.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:98,787,170 – 98,797,795
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
57 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 116 bp overlap
ChIP MCF-7 GSE48930.AR.MCF-7 122 bp overlap
ChIP MCF-7 ERP001226.AR.MCF-7 224 bp overlap
ARID1A 5 datasets
ChIP MCF-7 GSE123284.ARID1A.MCF-7 476 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 625 bp overlap
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 404 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 355 bp overlap
ChIP RMG-I GSE120058.ARID1A.RMG-I 169 bp overlap
ARID2 2 datasets
ChIP MCF-7_parental GSE123284.ARID2.MCF-7_parental 261 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ARID2.MCF-7_parental_4-hydroxytamoxifen 241 bp overlap
CBX2 1 dataset
ChIP HEK293T GSE34774.CBX2.HEK293T 173 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 195 bp overlap
CRX 2 datasets
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 201 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 224 bp overlap
CTCF 2 datasets
ChIP CD14 ENCSR000ATN.CTCF.CD14 417 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 159 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 385 bp overlap
DACH1 1 dataset
ChIP K562 ENCFF574LOW 243 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 279 bp overlap
ESR1 17 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 198 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 219 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 224 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 260 bp overlap
ChIP MCF-7_E2-80min-ERalpha GSE94023.ESR1.MCF-7_E2-80min-ERalpha 173 bp overlap
ChIP MCF-7_G6274 GSE117941.ESR1.MCF-7_G6274 225 bp overlap
ChIP MCF-7_HC11 GSE102882.ESR1.MCF-7_HC11 236 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 216 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 276 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 370 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 247 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 260 bp overlap
ChIP MCF-7_Veh_sc GSE117569.ESR1.MCF-7_Veh_sc 287 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 221 bp overlap
ChIP MCF-7_shFbxo_E2_4OHT GSE119702.ESR1.MCF-7_shFbxo_E2_4OHT 122 bp overlap
ChIP MCF-7_shFbxo_OHT GSE119702.ESR1.MCF-7_shFbxo_OHT 122 bp overlap
ChIP MDA-MB-134-VI_FI GSE109103.ESR1.MDA-MB-134-VI_FI 175 bp overlap
FOXA1 14 datasets
ChIP MCF-7 GSE81714.FOXA1.MCF-7 379 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 295 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 161 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 188 bp overlap
ChIP MCF-7_1117 GSE124667.FOXA1.MCF-7_1117 167 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 319 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 170 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 258 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 156 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 299 bp overlap
ChIP MCF-7_JC4691 GSE126004.FOXA1.MCF-7_JC4691 200 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 319 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 226 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 341 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 317 bp overlap
ChIP DE DE-FOXA2-1 358 bp overlap
ChIP DE DE-FOXA2-2 401 bp overlap
GATA1 3 datasets
ChIP K-562 GSE107726.GATA1.K-562 286 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 210 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 196 bp overlap
GATA2 5 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 182 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 182 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 287 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 200 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 215 bp overlap
GATA3 15 datasets
ChIP Jurkat GSE120063.GATA3.Jurkat 246 bp overlap
ChIP MCF-7 ENCFF352QVM 375 bp overlap
ChIP MCF-7 ENCFF437NQS 296 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 408 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 373 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 365 bp overlap
ChIP MCF-7 GSE40129.GATA3.MCF-7 195 bp overlap
ChIP MCF-7_DMSO GSE29073.GATA3.MCF-7_DMSO 136 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 307 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 154 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 254 bp overlap
ChIP MCF-7_E2 GSE29073.GATA3.MCF-7_E2 199 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 208 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 334 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 236 bp overlap
GATA4 6 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 204 bp overlap
ChIP DE DE-GATA4-1 557 bp overlap
ChIP DE DE-GATA4-2 602 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 307 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 216 bp overlap
ChIP foregut GSE117136.GATA4.foregut 365 bp overlap
GATA6 11 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 246 bp overlap
ChIP DE DE-GATA6-1 482 bp overlap
ChIP DE DE-GATA6-2 533 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 315 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 543 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 285 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 625 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 496 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 315 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 337 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 445 bp overlap
GATAD2B 1 dataset
ChIP K562 ENCFF696VMK 317 bp overlap
GRHL2 4 datasets
ChIP MCF-7 GSE109820.GRHL2.MCF-7 319 bp overlap
ChIP MCF-7 GSE99680.GRHL2.MCF-7 181 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 378 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 352 bp overlap
HDAC1 3 datasets
ChIP K562 ENCFF928TKZ 155 bp overlap
ChIP MCF-7_parental GSE123284.HDAC1.MCF-7_parental 213 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 434 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 155 bp overlap
ChIP MCF-7 ENCSR000BTP.HDAC2.MCF-7 123 bp overlap
HDGF 4 datasets
ChIP K-562 ENCSR197ALX.HDGF.K-562 252 bp overlap
ChIP K-562 ENCSR563YDA.HDGF.K-562 241 bp overlap
ChIP K562 ENCFF195BET 183 bp overlap
ChIP K562 ENCFF195BET 383 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 249 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 106 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 243 bp overlap
MBD3 1 dataset
ChIP MCF-7 GSE44737.MBD3.MCF-7 177 bp overlap
MEF2D 1 dataset
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 194 bp overlap
MLLT1 1 dataset
ChIP K-562 ENCSR107GRP.MLLT1.K-562 134 bp overlap
MORC2 1 dataset
ChIP HeLa_V5-MORC2-KO GSE95451.MORC2.HeLa_V5-MORC2-KO 164 bp overlap
MTA1 1 dataset
ChIP K-562 ENCSR807BGP.MTA1.K-562 107 bp overlap
NEUROD1 3 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 282 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 295 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 156 bp overlap
NR2C2 1 dataset
ChIP K562 ENCFF750AXF 85 bp overlap
NR2F2 2 datasets
ChIP MCF-7 ENCFF329FZB 336 bp overlap
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 272 bp overlap
NR3C1_mut 2 datasets
ChIP MCF-7_E2_Dex GSE81510.NR3C1_mut.MCF-7_E2_Dex 253 bp overlap
ChIP MCF-7_ICI_Dex GSE81510.NR3C1_mut.MCF-7_ICI_Dex 279 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 262 bp overlap
PGR 1 dataset
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 246 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 295 bp overlap
RAD21 1 dataset
ChIP HCT-116 GSE131606.RAD21.HCT-116 91 bp overlap
SIN3A 2 datasets
ChIP MCF-7 ENCFF521RDC 434 bp overlap
ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 263 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 282 bp overlap
SMARCA4 4 datasets
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 101 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 272 bp overlap
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 228 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 207 bp overlap
SMARCB1 4 datasets
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 345 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 396 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 397 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 277 bp overlap
SMARCC1 2 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 72 bp overlap
ChIP MCF-7 GSE124225.SMARCC1.MCF-7 195 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 203 bp overlap
SRSF3 2 datasets
ChIP K-562 ENCSR268QIQ.SRSF3.K-562 197 bp overlap
ChIP K-562 GSE120104.SRSF3.K-562 200 bp overlap
STAT3 2 datasets
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 275 bp overlap
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 270 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 311 bp overlap
XRCC5 1 dataset
ChIP K-562 GSE120104.XRCC5.K-562 197 bp overlap
ZBTB40 1 dataset
ChIP K562 ENCFF337GJB 232 bp overlap
ZMIZ1 2 datasets
ChIP THP-6_shCtrl GSE138516.ZMIZ1.THP-6_shCtrl 279 bp overlap
ChIP THP-6_shEts1 GSE138516.ZMIZ1.THP-6_shEts1 291 bp overlap
ZNF281 1 dataset
ChIP K-562 GSE121133.ZNF281.K-562 216 bp overlap
ZNF337 1 dataset
ChIP HEK293T GSE78099.ZNF337.HEK293T 262 bp overlap