chr9 : 97,419,540 97,419,943
403 bp 66 TFs 2 linked genes
This 403 bp open chromatin element is linked to TDRD7 and ENSG00000286375 and is bound by 66 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
TDRD7 7.4 kb Proximal Proximity
ENSG00000286375 7.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:97,414,540 – 97,424,943
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
AHDC1 1 dataset
ChIP HepG2 ENCFF069FSH 149 bp overlap
ARID1A 2 datasets
ChIP 12Z GSE129781.ARID1A.12Z 61 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 59 bp overlap
ATF3 1 dataset
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 130 bp overlap
BRD4 1 dataset
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 190 bp overlap
BRD9 1 dataset
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 100 bp overlap
CDX2 1 dataset
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 68 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_neural-crest-cell GSE108506.CHD7.hiPSC_derived_neural-crest-cell 121 bp overlap
CREB1 1 dataset
ChIP HepG2 ENCFF792THT 106 bp overlap
DAXX 1 dataset
ChIP PC-3 GSE68647.DAXX.PC-3 53 bp overlap
DPF2 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 202 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 170 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 243 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 399 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D46 GSE139377.ERG.aortic-endothelial-cell_D46 85 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 247 bp overlap
FOS 2 datasets
ChIP endothelial cell of umbilical vein ENCFF415XBG 146 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 234 bp overlap
FOSL1 3 datasets
ChIP HCT116 ENCFF540ZXN 125 bp overlap
ChIP HepG2 ENCFF095FBN 95 bp overlap
ChIP MG-63-3 GSE74230.FOSL1.MG-63-3 136 bp overlap
FOSL2 3 datasets
ChIP A-549 ENCSR000BQO.FOSL2.A-549 53 bp overlap
ChIP HepG2 ENCFF548CXY 143 bp overlap
ChIP hESC GSE69539.FOSL2.hESC 116 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 119 bp overlap
ChIP DE DE-FOXA2-1 403 bp overlap
ChIP DE DE-FOXA2-2 403 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 100 bp overlap
GATA2 3 datasets
ChIP endothelial cell of umbilical vein ENCFF148NLK 282 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 343 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 135 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 61 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 403 bp overlap
ChIP DE DE-GATA4-2 403 bp overlap
ChIP foregut GSE117136.GATA4.foregut 289 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 154 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 403 bp overlap
ChIP DE DE-GATA6-2 403 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 331 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 203 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 203 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 403 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 300 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 331 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 379 bp overlap
ChIP foregut GSE117136.GATA6.foregut 269 bp overlap
HLF 1 dataset
ChIP HepG2 ENCFF854JLR 221 bp overlap
HNF4A 5 datasets
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 110 bp overlap
ChIP GP5D GSE51234.HNF4A.GP5D 179 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 92 bp overlap
ChIP LoVo_PHASES GSE51290.HNF4A.LoVo_PHASES 115 bp overlap
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 95 bp overlap
HOMEZ 1 dataset
ChIP HepG2 ENCFF800ZQH 117 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 135 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 254 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 363 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 318 bp overlap
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 129 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 368 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EFA.JUN.endothelial_umbilical-vein 192 bp overlap
JUNB 2 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 76 bp overlap
ChIP HAEC GSE89970.JUNB.HAEC 214 bp overlap
JUND 3 datasets
ChIP SK-N-SH ENCFF551NEQ 84 bp overlap
ChIP SK-N-SH ENCFF971JKN 102 bp overlap
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 126 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 100 bp overlap
MAFF 1 dataset
ChIP HepG2 ENCFF452YUT 71 bp overlap
MAFK 3 datasets
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 57 bp overlap
ChIP HepG2 ENCFF743ZOF 60 bp overlap
ChIP IMR-90 ENCFF336DHZ 65 bp overlap
MYC 1 dataset
ChIP BJ_INDUCED GSE36570.MYC.BJ_INDUCED 98 bp overlap
MYOD1 2 datasets
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 228 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 244 bp overlap
NANOG 5 datasets
ChIP WA01 ERP004238.NANOG.WA01 251 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 189 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 378 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 217 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 191 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_Triptolide-30min GSE118494.NCAPH2.IMR-90_Triptolide-30min 163 bp overlap
NFIC 2 datasets
ChIP SK-N-SH ENCFF965AKM 61 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 83 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 102 bp overlap
PAX3-FOXO1 1 dataset
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.PAX3-FOXO1.Hs-352-Sk_PAX3-FOXO1-vector 182 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 98 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 235 bp overlap
POLR2A 2 datasets
ChIP endothelial cell of umbilical vein ENCFF303XUJ 145 bp overlap
ChIP transverse colon ENCFF610RWV 61 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 269 bp overlap
RCOR1 1 dataset
ChIP IMR-90 ENCSR000EFG.RCOR1.IMR-90 138 bp overlap
RELA 27 datasets
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 297 bp overlap
ChIP HUVEC-C_TNF-30min GSE121890.RELA.HUVEC-C_TNF-30min 93 bp overlap
ChIP HUVEC-C_TNF_30M GSE34500.RELA.HUVEC-C_TNF_30M 93 bp overlap
ChIP aortic-endothelial-cell_IL1B_D10 GSE139377.RELA.aortic-endothelial-cell_IL1B_D10 170 bp overlap
ChIP aortic-endothelial-cell_IL1B_D11 GSE139377.RELA.aortic-endothelial-cell_IL1B_D11 229 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 393 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 339 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 246 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 380 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 289 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 264 bp overlap
ChIP aortic-endothelial-cell_IL1B_D24 GSE139377.RELA.aortic-endothelial-cell_IL1B_D24 110 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 301 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 317 bp overlap
ChIP aortic-endothelial-cell_IL1B_D35 GSE139377.RELA.aortic-endothelial-cell_IL1B_D35 351 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 390 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 182 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 279 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 206 bp overlap
ChIP aortic-endothelial-cell_IL1B_D41 GSE139377.RELA.aortic-endothelial-cell_IL1B_D41 150 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 147 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 185 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 283 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 205 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 346 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 278 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 323 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 214 bp overlap
SMAD2 4 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 165 bp overlap
ChIP hESC GSE29422.SMAD2.hESC 116 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 403 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 327 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 403 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 377 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 403 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 380 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 371 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 403 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 403 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 403 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 161 bp overlap
SMARCA2 1 dataset
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 403 bp overlap
SMARCA4 6 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 325 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 289 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 297 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 61 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 50 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 190 bp overlap
SMARCB1 3 datasets
ChIP proliferating-human-fibroblast GSE131711.SMARCB1.proliferating-human-fibroblast 161 bp overlap
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 403 bp overlap
ChIP proliferating-human-fibroblast_ASO_LINC GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_LINC 228 bp overlap
SMARCC1 4 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 318 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 81 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 370 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 215 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF062VSQ 87 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 335 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 355 bp overlap
SOX5 1 dataset
ChIP HepG2 ENCFF470KZD 110 bp overlap
SOX6 1 dataset
ChIP HepG2 ENCFF767OCK 165 bp overlap
SS18 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 244 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 287 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 395 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 348 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 139 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 274 bp overlap
TEAD4 1 dataset
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 128 bp overlap
ZNF219 1 dataset
ChIP HepG2 ENCFF266JIR 192 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 148 bp overlap