chr1 : 178,320,230 – 178,320,824
594 bp 55 TFs 0 linked genes
This 594 bp open chromatin element has no linked target genes and is bound by 55 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:178,315,230 – 178,325,824
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
BRD4 2 datasets
ChIP HCT-15 GSE73319.BRD4.HCT-15 90 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 68 bp overlap
CTCF 6 datasets
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif DE_24h DE_24h-CTCF_MA1929.2 31 bp overlap
Motif DE_48h DE_48h-CTCF_MA1929.2 31 bp overlap
ChIP RWPE2 ENCFF911IEE 594 bp overlap
ChIP esophagus squamous epithelium ENCFF037IYT 304 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 457 bp overlap
ESR2 1 dataset
Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCFF528YED 239 bp overlap
FEZF2 6 datasets
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif DE_24h DE_24h-FEZF2_MA2341.1 8 bp overlap
Motif DE_24h DE_24h-FEZF2_MA2341.1 8 bp overlap
Motif DE_48h DE_48h-FEZF2_MA2341.1 8 bp overlap
Motif DE_48h DE_48h-FEZF2_MA2341.1 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 269 bp overlap
ChIP DE DE-FOXA2-2 264 bp overlap
FOXC2 4 datasets
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
Motif DE_24h DE_24h-FOXC2_MA0846.2 11 bp overlap
Motif DE_48h DE_48h-FOXC2_MA0846.2 11 bp overlap
Motif ES_0h ES_0h-FOXC2_MA0846.2 11 bp overlap
FOXD2 4 datasets
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
Motif DE_24h DE_24h-FOXD2_MA0847.4 11 bp overlap
Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap
Motif ES_0h ES_0h-FOXD2_MA0847.4 11 bp overlap
FOXE1 4 datasets
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
Motif DE_24h DE_24h-FOXE1_MA1487.3 12 bp overlap
Motif DE_48h DE_48h-FOXE1_MA1487.3 12 bp overlap
Motif ES_0h ES_0h-FOXE1_MA1487.3 12 bp overlap
Foxj3 4 datasets
Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap
Motif DE_24h DE_24h-Foxj3_MA0851.2 9 bp overlap
Motif DE_48h DE_48h-Foxj3_MA0851.2 9 bp overlap
Motif ES_0h ES_0h-Foxj3_MA0851.2 9 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCFF446EIF 347 bp overlap
KLF16 3 datasets
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
Motif DE_24h DE_24h-KLF16_MA0741.1 11 bp overlap
Motif DE_48h DE_48h-KLF16_MA0741.1 11 bp overlap
KLF4 4 datasets
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap
Motif DE_48h DE_48h-KLF4_MA0039.5 8 bp overlap
Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap
KLF5 4 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
Motif DE_48h DE_48h-KLF5_MA0599.1 10 bp overlap
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
MAF 2 datasets
Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap
Motif DE_24h DE_24h-MAF_MA1520.2 13 bp overlap
MAX 1 dataset
ChIP WTC11 ENCFF223QFY 433 bp overlap
Nanog 1 dataset
Motif DE_12h DE_12h-Nanog_MA2339.1 7 bp overlap
PHF8 3 datasets
ChIP H1 ENCFF427UFV 453 bp overlap
ChIP H1 ENCFF427UFV 514 bp overlap
ChIP H1 ENCFF427UFV 310 bp overlap
PLAG1 1 dataset
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
POLR2A 6 datasets
ChIP GM23338 ENCFF450WCS 394 bp overlap
ChIP H1 ENCFF566JSR 206 bp overlap
ChIP H1 ENCFF566JSR 538 bp overlap
ChIP H1 ENCFF566JSR 333 bp overlap
ChIP H1 ENCFF770YBQ 391 bp overlap
ChIP H1 ENCFF770YBQ 471 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 194 bp overlap
PPARG 3 datasets
Motif DE_12h DE_12h-PPARG_MA0066.2 19 bp overlap
Motif DE_24h DE_24h-PPARG_MA0066.2 19 bp overlap
Motif DE_48h DE_48h-PPARG_MA0066.2 19 bp overlap
SIN3A 2 datasets
ChIP A549 ENCFF752ATT 590 bp overlap
ChIP A549 ENCFF752ATT 389 bp overlap
SMAD2_3 1 dataset
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 177 bp overlap
SOX10 4 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif DE_24h DE_24h-SOX10_MA0442.3 6 bp overlap
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX4 4 datasets
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
Motif DE_24h DE_24h-SOX4_MA0867.3 8 bp overlap
Motif DE_48h DE_48h-SOX4_MA0867.3 8 bp overlap
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
SP3 1 dataset
ChIP HEK293 ENCFF087XLA 557 bp overlap
SP5 3 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Sox11 4 datasets
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Motif DE_24h DE_24h-Sox11_MA0869.3 8 bp overlap
Motif DE_48h DE_48h-Sox11_MA0869.3 8 bp overlap
Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap
Sox6 4 datasets
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Motif DE_24h DE_24h-Sox6_MA0515.1 10 bp overlap
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
TAF1 4 datasets
ChIP H1 ENCFF478SZO 407 bp overlap
ChIP H1 ENCFF478SZO 472 bp overlap
ChIP H1 ENCFF478SZO 266 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 94 bp overlap
TCF7L1 3 datasets
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_24h DE_24h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_48h DE_48h-TCF7L1_MA1421.1 12 bp overlap
VDR 2 datasets
ChIP LS180_125 GSE31939.VDR.LS180_125 152 bp overlap
ChIP primary-prostate-epithelial-cell GSE124576.VDR.primary-prostate-epithelial-cell 130 bp overlap
Wt1 3 datasets
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
Motif DE_24h DE_24h-Wt1_MA1627.2 10 bp overlap
Motif DE_48h DE_48h-Wt1_MA1627.2 10 bp overlap
YY1 4 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 99 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 147 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 92 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 53 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 208 bp overlap
ZBTB26 3 datasets
ChIP HEK293 ENCFF752POA 487 bp overlap
ChIP HEK293 ENCFF752TCU 344 bp overlap
ChIP HEK293 ENCFF752TCU 358 bp overlap
ZBTB48 1 dataset
ChIP HEK293 ENCFF809BPK 465 bp overlap
ZBTB6 2 datasets
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
Motif ES_0h ES_0h-ZBTB6_MA1581.2 9 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCFF847JIE 532 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 462 bp overlap
ZFP69B 1 dataset
ChIP HEK293 ENCFF942LFP 309 bp overlap
ZKSCAN3 3 datasets
Motif DE_12h DE_12h-ZKSCAN3_MA1973.2 14 bp overlap
Motif DE_24h DE_24h-ZKSCAN3_MA1973.2 14 bp overlap
Motif DE_48h DE_48h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF148 3 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif DE_24h DE_24h-ZNF148_MA1653.2 10 bp overlap
Motif DE_48h DE_48h-ZNF148_MA1653.2 10 bp overlap
ZNF189 1 dataset
ChIP HEK293 ENCFF638TIB 462 bp overlap
ZNF213 3 datasets
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
Motif DE_24h DE_24h-ZNF213_MA2121.1 12 bp overlap
Motif DE_48h DE_48h-ZNF213_MA2121.1 12 bp overlap
ZNF281 3 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
Motif DE_48h DE_48h-ZNF281_MA1630.3 10 bp overlap
ZNF335 3 datasets
ChIP HEK293 ENCFF784SLD 472 bp overlap
ChIP HEK293 ENCFF784SLD 482 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 75 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 517 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 169 bp overlap
ZNF343 4 datasets
Motif DE_12h DE_12h-ZNF343_MA1711.2 16 bp overlap
Motif DE_24h DE_24h-ZNF343_MA1711.2 16 bp overlap
Motif DE_48h DE_48h-ZNF343_MA1711.2 16 bp overlap
Motif ES_0h ES_0h-ZNF343_MA1711.2 16 bp overlap
ZNF561 2 datasets
ChIP HEK293 ENCFF399XKF 363 bp overlap
ChIP HEK293 ENCFF399XKF 441 bp overlap
ZNF692 1 dataset
ChIP HEK293 ENCFF040AZE 126 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
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