chr9 : 77,013,906 77,014,480
574 bp 51 TFs 1 linked gene
This 574 bp open chromatin element is linked to FOXB2 and is bound by 51 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
FOXB2 5.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:77,008,906 – 77,019,480
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
51 transcription factors
Source
Cell type
AGO1 2 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 218 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 196 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 574 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 59 bp overlap
BCOR 2 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 423 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 574 bp overlap
BRD4 4 datasets
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 486 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 301 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 303 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 431 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 171 bp overlap
CBX8 2 datasets
ChIP A-549 ENCSR616MOB.CBX8.A-549 86 bp overlap
ChIP H1 ENCFF095JHA 491 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 224 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 144 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 203 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 530 bp overlap
CTCF 10 datasets
ChIP 22Rv1 ENCFF466OXN 61 bp overlap
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 316 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 89 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 56 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 472 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 114 bp overlap
ChIP activated CD8-positive, alpha-beta T cell ENCFF006MHW 51 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 195 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 145 bp overlap
ChIP neural progenitor cell ENCFF581WPG 63 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 418 bp overlap
ChIP BLaER1 ENCFF274GAT 251 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 241 bp overlap
ESR1 4 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 274 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 312 bp overlap
ChIP MCF-7 GSE148277.ESR1.MCF-7 309 bp overlap
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 304 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_1H GSE41166.ETS1.HUVEC-C_VEGF_1H 230 bp overlap
EZH2 32 datasets
ChIP A673 ENCFF790MVL 89 bp overlap
ChIP A673 ENCFF955JRZ 89 bp overlap
ChIP GM23248 ENCFF404ZHM 155 bp overlap
ChIP GM23248 ENCFF404ZHM 216 bp overlap
ChIP GM23248 ENCFF506FWX 60 bp overlap
ChIP GM23338 ENCFF613YON 574 bp overlap
ChIP GM23338 ENCFF886DXX 574 bp overlap
ChIP H1 ENCFF232NZA 574 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 574 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 558 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 500 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 501 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 498 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 574 bp overlap
ChIP astrocyte ENCFF365JTP 574 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 574 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 544 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 574 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 227 bp overlap
ChIP fibroblast of lung ENCFF479BAW 560 bp overlap
ChIP fibroblast of lung ENCFF479BAW 335 bp overlap
ChIP fibroblast of lung ENCFF479BAW 134 bp overlap
ChIP hepatocyte ENCFF552DZB 574 bp overlap
ChIP keratinocyte ENCFF070STK 361 bp overlap
ChIP keratinocyte ENCFF070STK 550 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 455 bp overlap
ChIP myotube ENCFF857GWB 121 bp overlap
ChIP myotube ENCFF857GWB 388 bp overlap
ChIP neural cell ENCFF610EPB 93 bp overlap
ChIP neural cell ENCFF610EPB 293 bp overlap
ChIP neural progenitor cell ENCFF018MKA 574 bp overlap
ChIP neural progenitor cell ENCFF472NFV 574 bp overlap
FOXA1 2 datasets
ChIP MCF-7_E2 GSE59530.FOXA1.MCF-7_E2 130 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 167 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 219 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 293 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 244 bp overlap
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 193 bp overlap
JARID2 2 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 574 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 574 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 543 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 227 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 114 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 203 bp overlap
MYCN 2 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 495 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 431 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 320 bp overlap
PCGF2 3 datasets
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 302 bp overlap
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 358 bp overlap
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 154 bp overlap
POLR2A 5 datasets
ChIP esophagus muscularis mucosa ENCFF432ZCY 144 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 172 bp overlap
ChIP neural cell ENCFF604SPB 191 bp overlap
ChIP sigmoid colon ENCFF725QFT 130 bp overlap
ChIP sigmoid colon ENCFF748YVT 159 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 481 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 474 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 371 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 206 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 224 bp overlap
RELA 1 dataset
ChIP SGBS GSE64233.RELA.SGBS 140 bp overlap
RING1 2 datasets
ChIP SYO-1_shCt GSE139053.RING1.SYO-1_shCt 574 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RING1.SYO-1_shRING1A-B 574 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 574 bp overlap
ChIP hMSC_D10 GSE125166.RNF2.hMSC_D10 275 bp overlap
RORC 1 dataset
ChIP HCC70 GSE126380.RORC.HCC70 404 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 245 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 183 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 365 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 244 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 218 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 530 bp overlap
SS18 2 datasets
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 72 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 343 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 224 bp overlap
SUZ12 8 datasets
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF881NFR 574 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 238 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 458 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 294 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 101 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 574 bp overlap
ChIP hMSC_D10 GSE125166.SUZ12.hMSC_D10 222 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 246 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 151 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 539 bp overlap
ZNF445 1 dataset
ChIP HEK293T GSE78099.ZNF445.HEK293T 165 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 323 bp overlap