Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

58 transcription factors

ATF4 1 dataset

Motif DE_36h DE_36h-ATF4_MA0833.3 10 bp overlap

BRD4 2 datasets

ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 262 bp overlap

ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 155 bp overlap

CDX1 1 dataset

Motif DE_36h DE_36h-CDX1_MA0878.3 10 bp overlap

CDX4 1 dataset

Motif DE_36h DE_36h-CDX4_MA1473.2 9 bp overlap

CEBPG 1 dataset

Motif DE_36h DE_36h-CEBPG_MA1636.2 10 bp overlap

CTCF 6 datasets

ChIP BE2C ENCFF757SRF 317 bp overlap

ChIP BE2C ENCSR000DQD.CTCF.BE2C 173 bp overlap

ChIP K-562_dCas9-KRAB GSE132212.CTCF.K-562_dCas9-KRAB 203 bp overlap

ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 174 bp overlap

ChIP NB69 GSE101295.CTCF.NB69 174 bp overlap

ChIP endodermal cell ENCFF471YCZ 460 bp overlap

DUX4 1 dataset

Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap

EHF 1 dataset

Motif DE_36h DE_36h-EHF_MA0598.4 9 bp overlap

ELF3 1 dataset

Motif DE_36h DE_36h-ELF3_MA0640.3 9 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 385 bp overlap

ERF::SREBF2 1 dataset

Motif DE_36h DE_36h-ERFSREBF2_MA1939.2 16 bp overlap

ETV7 1 dataset

Motif DE_36h DE_36h-ETV7_MA1708.2 9 bp overlap

FLI1 2 datasets

ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 367 bp overlap

ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 323 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 434 bp overlap

ChIP DE DE-FOXA2-2 504 bp overlap

FOXD2 1 dataset

Motif DE_36h DE_36h-FOXD2_MA0847.4 11 bp overlap

FOXD3 1 dataset

Motif DE_36h DE_36h-FOXD3_MA0041.3 14 bp overlap

GATA3 3 datasets

ChIP Kelly GSE94822.GATA3.Kelly 214 bp overlap

ChIP Kelly GSE65664.GATA3.Kelly 161 bp overlap

ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 237 bp overlap

GATA4 3 datasets

ChIP DE DE-GATA4-1 452 bp overlap

ChIP DE DE-GATA4-2 552 bp overlap

ChIP Hep-G2 GSE135714.GATA4.Hep-G2 210 bp overlap

GATA6 9 datasets

ChIP DE DE-GATA6-1 426 bp overlap

ChIP DE DE-GATA6-2 556 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 603 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 582 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 596 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 597 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 625 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 625 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 423 bp overlap

HAND2 3 datasets

ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 208 bp overlap

Motif DE_36h DE_36h-HAND2_MA1638.2 6 bp overlap

ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 359 bp overlap

HOXA10 1 dataset

Motif DE_36h DE_36h-HOXA10_MA0899.2 9 bp overlap

HOXB13 1 dataset

Motif DE_36h DE_36h-HOXB13_MA0901.3 9 bp overlap

HOXD9 1 dataset

Motif DE_36h DE_36h-HOXD9_MA0913.3 9 bp overlap

ISL1 1 dataset

ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 407 bp overlap

JUN 2 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 352 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 400 bp overlap

Lhx3 1 dataset

Motif DE_36h DE_36h-Lhx3_MA0135.2 12 bp overlap

MYCN 1 dataset

ChIP Kelly GSE94822.MYCN.Kelly 129 bp overlap

Mecom 1 dataset

Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap

NR1I2 1 dataset

Motif DE_36h DE_36h-NR1I2_MA1533.2 15 bp overlap

Nr2e1 1 dataset

Motif DE_36h DE_36h-Nr2e1_MA0676.1 9 bp overlap

PHOX2B 2 datasets

ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 350 bp overlap

ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 486 bp overlap

POU1F1 1 dataset

Motif DE_36h DE_36h-POU1F1_MA0784.3 14 bp overlap

POU2F1 1 dataset

Motif DE_36h DE_36h-POU2F1_MA0785.2 9 bp overlap

POU2F2 1 dataset

Motif DE_36h DE_36h-POU2F2_MA0507.3 13 bp overlap

POU2F3 1 dataset

Motif DE_36h DE_36h-POU2F3_MA0627.3 9 bp overlap

POU3F1 1 dataset

Motif DE_36h DE_36h-POU3F1_MA0786.2 10 bp overlap

POU3F2 1 dataset

Motif DE_36h DE_36h-POU3F2_MA0787.1 12 bp overlap

POU3F3 1 dataset

Motif DE_36h DE_36h-POU3F3_MA0788.1 13 bp overlap

POU4F2 1 dataset

Motif DE_36h DE_36h-POU4F2_MA0683.2 15 bp overlap

POU5F1 1 dataset

Motif DE_36h DE_36h-POU5F1_MA1115.2 7 bp overlap

POU5F1B 1 dataset

Motif DE_36h DE_36h-POU5F1B_MA0792.1 9 bp overlap

PSIP1 1 dataset

ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 149 bp overlap

SMAD2 1 dataset

ChIP endoderm GSE29422.SMAD2.endoderm 143 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 594 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 605 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 551 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 625 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 566 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 625 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 625 bp overlap

SMARCC1 2 datasets

ChIP DE_D1 S10-DE-d1-BAF155-exp1 278 bp overlap

ChIP DE_D1 S15-DE-d1-BAF155-exp1 457 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 234 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 300 bp overlap

SP1 1 dataset

Motif DE_36h DE_36h-SP1_MA0079.5 9 bp overlap

SP5 1 dataset

Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap

SPIB 1 dataset

Motif DE_36h DE_36h-SPIB_MA0081.3 13 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 267 bp overlap

TBX2 1 dataset

ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 193 bp overlap

TFAP2B 1 dataset

ChIP SK-N-SH ENCFF869XXQ 225 bp overlap

YY1 1 dataset

ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 134 bp overlap

ZKSCAN5 1 dataset

Motif DE_36h DE_36h-ZKSCAN5_MA1652.2 9 bp overlap

ZNF263 1 dataset

Motif DE_36h DE_36h-ZNF263_MA0528.3 7 bp overlap

ZNF85 1 dataset

Motif DE_36h DE_36h-ZNF85_MA1720.2 12 bp overlap

Genome Browser