chr9 : 4,081,271 – 4,081,703
432 bp 62 TFs 1 linked gene
This 432 bp open chromatin element is linked to GLIS3 and is bound by 62 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GLIS3 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:4,076,271 – 4,086,703
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
62 transcription factors
Source
Cell type
BHLHE22 2 datasets
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif ES_0h ES_0h-BHLHE22_MA1635.2 6 bp overlap
BRD4 3 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 191 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 227 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
Bhlha15 2 datasets
Motif DE_12h DE_12h-Bhlha15_MA1472.3 8 bp overlap
Motif ES_0h ES_0h-Bhlha15_MA1472.3 8 bp overlap
CREB1 3 datasets
ChIP GM23338 ENCFF432ZEW 264 bp overlap
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 217 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 144 bp overlap
CTCF 1 dataset
ChIP IMR-90 ENCFF887MRH 61 bp overlap
DDX21 2 datasets
ChIP A-375 GSE128080.DDX21.A-375 231 bp overlap
ChIP A-375_1726plus GSE128080.DDX21.A-375_1726plus 249 bp overlap
ERG 1 dataset
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 203 bp overlap
ETS1 2 datasets
ChIP GM23338 ENCFF701IZH 342 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 142 bp overlap
EZH2 1 dataset
ChIP endothelial cell of umbilical vein ENCFF539AKL 374 bp overlap
FEZF2 2 datasets
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
GATA4 1 dataset
Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap
HCFC1 5 datasets
ChIP GM12878 ENCSR514VAY.HCFC1.GM12878 292 bp overlap
ChIP K-562 ENCSR000EFN.HCFC1.K-562 183 bp overlap
ChIP K562 ENCFF959WVM 306 bp overlap
ChIP MCF-7 ENCFF595ZTV 208 bp overlap
ChIP MCF-7 ENCSR697CUP.HCFC1.MCF-7 319 bp overlap
Hand1::Tcf3 1 dataset
Motif DE_12h DE_12h-Hand1Tcf3_MA0092.2 9 bp overlap
ISL2 2 datasets
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
Motif ES_0h ES_0h-ISL2_MA0914.2 6 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 312 bp overlap
KLF10 1 dataset
ChIP MCF-7 GSE97661.KLF10.MCF-7 222 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MYF5 2 datasets
Motif DE_12h DE_12h-MYF5_MA1641.2 8 bp overlap
Motif ES_0h ES_0h-MYF5_MA1641.2 8 bp overlap
NEUROD1 2 datasets
Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap
Motif ES_0h ES_0h-NEUROD1_MA1109.2 8 bp overlap
NFIB 2 datasets
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
Motif ES_0h ES_0h-NFIB_MA1643.2 17 bp overlap
NFYB 3 datasets
Motif DE_12h DE_12h-NFYB_MA0502.3 9 bp overlap
Motif ES_0h ES_0h-NFYB_MA0502.3 9 bp overlap
ChIP WTC11 ENCFF751ZTQ 357 bp overlap
NFYC 1 dataset
ChIP Hep-G2 ENCSR569ARC.NFYC.Hep-G2 144 bp overlap
Neurod2 4 datasets
Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif ES_0h ES_0h-Neurod2_MA0668.3 8 bp overlap
Motif ES_0h ES_0h-Neurod2_MA1993.2 6 bp overlap
Nkx3-1 2 datasets
Motif DE_12h DE_12h-Nkx3-1_MA0124.3 7 bp overlap
Motif ES_0h ES_0h-Nkx3-1_MA0124.3 7 bp overlap
Nkx3-2 2 datasets
Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap
Motif ES_0h ES_0h-Nkx3-2_MA0122.4 10 bp overlap
Olig2 2 datasets
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 279 bp overlap
PKNOX1 1 dataset
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
POU2F1 1 dataset
ChIP T-47D GSE148277.POU2F1.T-47D 256 bp overlap
PRDM9 2 datasets
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
Ptf1A 2 datasets
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
Motif ES_0h ES_0h-Ptf1A_MA1619.2 8 bp overlap
RAD21 1 dataset
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 78 bp overlap
RBPJ 2 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
RNF2 1 dataset
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 244 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 122 bp overlap
SIX5 5 datasets
ChIP A-549 ENCSR000BRL.SIX5.A-549 153 bp overlap
ChIP GM12878 ENCFF766FEJ 234 bp overlap
ChIP GM12878 ENCSR000BJE.SIX5.GM12878 200 bp overlap
ChIP H1 ENCFF942SOJ 215 bp overlap
ChIP WA01 ENCSR000BIQ.SIX5.WA01 234 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 221 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 200 bp overlap
Tcf12 2 datasets
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap
Thap11 2 datasets
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
Motif ES_0h ES_0h-Thap11_MA1573.2 14 bp overlap
Twist2 2 datasets
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap
USF1 3 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 213 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 190 bp overlap
YY1 11 datasets
ChIP A-549 ENCSR000BPM.YY1.A-549 172 bp overlap
ChIP H1 ENCFF524BTL 260 bp overlap
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 188 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 268 bp overlap
ChIP Ishikawa ENCFF505XQX 316 bp overlap
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 137 bp overlap
ChIP K-562 ENCSR000BMH.YY1.K-562 97 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 235 bp overlap
ChIP SK-N-SH ENCSR000BSM.YY1.SK-N-SH 148 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 218 bp overlap
ChIP WA01 GSE39096.YY1.WA01 170 bp overlap
ZBTB18 2 datasets
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
Motif ES_0h ES_0h-ZBTB18_MA0698.2 11 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 365 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 232 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 188 bp overlap
ZFP14 2 datasets
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
Motif ES_0h ES_0h-ZFP14_MA1972.1 15 bp overlap
ZKSCAN5 2 datasets
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
Motif ES_0h ES_0h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF143 17 datasets
ChIP CUTLL1 GSE29600.ZNF143.CUTLL1 213 bp overlap
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 161 bp overlap
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 220 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 251 bp overlap
ChIP GM12878 ENCSR936XTK.ZNF143.GM12878 295 bp overlap
ChIP GM12878 ENCSR000DZL.ZNF143.GM12878 105 bp overlap
ChIP HEK293T GSE39263.ZNF143.HEK293T 247 bp overlap
ChIP HeLa GSE39263.ZNF143.HeLa 257 bp overlap
ChIP Hep-G2 ENCSR080UEM.ZNF143.Hep-G2 360 bp overlap
ChIP HepG2 ENCFF658YIR 362 bp overlap
ChIP K-562 ENCSR000EGP.ZNF143.K-562 150 bp overlap
ChIP MCF-7 GSE76454.ZNF143.MCF-7 432 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 345 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 247 bp overlap
ChIP WA09 GSE105028.ZNF143.WA09 369 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 341 bp overlap
ChIP WTC11 ENCFF249JUK 169 bp overlap
ZNF274 1 dataset
Motif DE_12h DE_12h-ZNF274_MA1592.2 12 bp overlap
ZNF281 2 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF460 2 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap
ZNF580 2 datasets
ChIP HEK293 ENCFF906MQV 130 bp overlap
ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 268 bp overlap
ZNF76 2 datasets
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
Motif ES_0h ES_0h-ZNF76_MA1716.2 17 bp overlap
ZNF770 2 datasets
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
Motif ES_0h ES_0h-ZNF770_MA2099.1 8 bp overlap
ZNF8 1 dataset
Motif DE_12h DE_12h-ZNF8_MA1718.1 20 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 188 bp overlap
Zfp809 2 datasets
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
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