chr9 : 1,046,882 – 1,047,502
620 bp 81 TFs 3 linked genes
This 620 bp open chromatin element is linked to LINC01230, DMRT2, and ENSG00000286684 and is bound by 81 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01230 1.3 kb Proximal Proximity
DMRT2 2.9 kb Proximal Proximity
ENSG00000286684 4.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:1,041,882 – 1,052,502
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
81 transcription factors
Source
Cell type
Ahr::Arnt 2 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif ES_0h ES_0h-AhrArnt_MA0006.2 5 bp overlap
Atf3 1 dataset
Motif DE_12h DE_12h-Atf3_MA1988.2 7 bp overlap
BATF 1 dataset
Motif DE_12h DE_12h-BATF_MA1634.2 7 bp overlap
BATF3 1 dataset
Motif DE_12h DE_12h-BATF3_MA0835.3 7 bp overlap
BATF::JUN 1 dataset
Motif DE_12h DE_12h-BATFJUN_MA0462.3 7 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 577 bp overlap
BNC2 1 dataset
Motif DE_12h DE_12h-BNC2_MA1928.2 7 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 620 bp overlap
BRD4 1 dataset
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 213 bp overlap
Bach1::Mafk 1 dataset
Motif DE_12h DE_12h-Bach1Mafk_MA0591.2 12 bp overlap
Dmrt1 1 dataset
Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap
E2F8 1 dataset
ChIP GM12878 ENCSR793HVL.E2F8.GM12878 292 bp overlap
ELF3 1 dataset
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 128 bp overlap
ETV2 1 dataset
Motif DE_12h DE_12h-ETV2_MA0762.2 9 bp overlap
EZH2 15 datasets
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 181 bp overlap
ChIP GM23338 ENCFF613YON 213 bp overlap
ChIP GM23338 ENCFF613YON 225 bp overlap
ChIP GM23338 ENCFF886DXX 82 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 152 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 361 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 620 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 267 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 553 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 325 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 69 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 233 bp overlap
ChIP keratinocyte ENCFF070STK 600 bp overlap
ChIP keratinocyte ENCFF070STK 378 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 464 bp overlap
FOSL2 1 dataset
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
FOXA1 3 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 314 bp overlap
ChIP LNCaP_S2101-48H GSE114266.FOXA1.LNCaP_S2101-48H 208 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 80 bp overlap
FOXA2 2 datasets
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 278 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 281 bp overlap
FOXO6 1 dataset
Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 136 bp overlap
HOXC13 3 datasets
Motif DE_12h DE_12h-HOXC13_MA0907.2 9 bp overlap
Motif DE_12h DE_12h-HOXC13_MA0907.2 9 bp overlap
Motif DE_12h DE_12h-HOXC13_MA0907.2 9 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF824TGK 170 bp overlap
JARID2 3 datasets
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 550 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 553 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 556 bp overlap
JUN 8 datasets
ChIP 786-O GSE86092.JUN.786-O 177 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 325 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 557 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 416 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 358 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 426 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 398 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 544 bp overlap
Jun 1 dataset
Motif DE_12h DE_12h-Jun_MA0489.3 8 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 126 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 166 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 138 bp overlap
MAF 1 dataset
Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap
MAFK 1 dataset
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 355 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
Mafg 1 dataset
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 620 bp overlap
Nfe2l2 1 dataset
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
Nr2F6 1 dataset
Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap
OSR2 2 datasets
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
Motif ES_0h ES_0h-OSR2_MA1646.2 8 bp overlap
PATZ1 2 datasets
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
PBX3 2 datasets
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
Motif ES_0h ES_0h-PBX3_MA1114.2 11 bp overlap
PKNOX1 2 datasets
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
Motif ES_0h ES_0h-PKNOX1_MA0782.3 10 bp overlap
PLAGL2 1 dataset
Motif ES_0h ES_0h-PLAGL2_MA1548.2 8 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 533 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 612 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 222 bp overlap
Pou5f1::Sox2 1 dataset
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
RB1 1 dataset
ChIP GM12878 ENCSR785OKZ.RB1.GM12878 312 bp overlap
RNF2 1 dataset
ChIP WA01 GSE104690.RNF2.WA01 620 bp overlap
RORB 1 dataset
Motif DE_12h DE_12h-RORB_MA1150.2 10 bp overlap
RUNX3 1 dataset
Motif DE_12h DE_12h-RUNX3_MA0684.3 8 bp overlap
RXRA::VDR 1 dataset
Motif DE_12h DE_12h-RXRAVDR_MA0074.1 15 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 377 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 553 bp overlap
SMAD2_3 2 datasets
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 277 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 264 bp overlap
SMARCA4 2 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 620 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 325 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 620 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 207 bp overlap
SOX10 2 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SREBF1 2 datasets
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
Motif ES_0h ES_0h-SREBF1_MA0595.1 10 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 441 bp overlap
SUZ12 2 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 552 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 164 bp overlap
Stat2 2 datasets
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
Stat5a 2 datasets
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
Motif ES_0h ES_0h-Stat5a_MA1624.2 9 bp overlap
Stat5a::Stat5b 2 datasets
Motif DE_12h DE_12h-Stat5aStat5b_MA0519.2 9 bp overlap
Motif ES_0h ES_0h-Stat5aStat5b_MA0519.2 9 bp overlap
TEAD4 1 dataset
ChIP ESC S26-ESC-d0-TEAD4-exp1 544 bp overlap
TFAP2A 2 datasets
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
Motif ES_0h ES_0h-TFAP2A_MA0003.5 9 bp overlap
TFAP2B 2 datasets
Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap
Motif ES_0h ES_0h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 2 datasets
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
Motif ES_0h ES_0h-TFAP2C_MA0814.3 9 bp overlap
TFAP2E 2 datasets
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
Motif ES_0h ES_0h-TFAP2E_MA1569.2 9 bp overlap
TFAP4::ETV1 2 datasets
Motif DE_12h DE_12h-TFAP4ETV1_MA1966.2 13 bp overlap
Motif ES_0h ES_0h-TFAP4ETV1_MA1966.2 13 bp overlap
THRA 2 datasets
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
Motif ES_0h ES_0h-THRA_MA1969.2 18 bp overlap
ZBED4 1 dataset
ChIP Hep-G2 ENCSR409PMR.ZBED4.Hep-G2 117 bp overlap
ZBTB26 1 dataset
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
ZBTB6 2 datasets
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
Motif ES_0h ES_0h-ZBTB6_MA1581.2 9 bp overlap
ZIM3 2 datasets
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap
ZKSCAN5 2 datasets
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
Motif ES_0h ES_0h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF140 1 dataset
Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap
ZNF184 2 datasets
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
Motif ES_0h ES_0h-ZNF184_MA2120.1 13 bp overlap
ZNF213 2 datasets
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
Motif ES_0h ES_0h-ZNF213_MA2121.1 12 bp overlap
ZNF257 2 datasets
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
ZNF530 2 datasets
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap
ZSCAN16 1 dataset
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap
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