chr9 : 981,543 – 981,915
372 bp 48 TFs 1 linked gene
This 372 bp open chromatin element is linked to DMRT3 and is bound by 48 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
DMRT3 4.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:976,543 – 986,915
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
48 transcription factors
Source
Cell type
AGO1 1 dataset
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 246 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 319 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 256 bp overlap
BRD4 1 dataset
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 355 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 337 bp overlap
CTCF 86 datasets
ChIP A-549 ENCSR000DPF.CTCF.A-549 142 bp overlap
ChIP AG04450 ENCFF116DJL 297 bp overlap
ChIP AG04450 ENCFF116DJL 82 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 148 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 210 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 271 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 191 bp overlap
ChIP GM12870 ENCSR000DRK.CTCF.GM12870 160 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 197 bp overlap
ChIP GM12874 ENCSR000DRR.CTCF.GM12874 110 bp overlap
ChIP GM12875 ENCSR000DRU.CTCF.GM12875 157 bp overlap
ChIP GM12878 ENCFF511URZ 205 bp overlap
ChIP GM12878 ENCSR000DKV.CTCF.GM12878 118 bp overlap
ChIP GM12878 ENCSR000DZN.CTCF.GM12878 101 bp overlap
ChIP GM17942 GSE76922.CTCF.GM17942 153 bp overlap
ChIP GM23338 ENCFF531QOI 295 bp overlap
ChIP GM23338 ENCFF772DML 144 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 145 bp overlap
ChIP H9 ENCFF152GTF 311 bp overlap
ChIP HSPC-CD34 GSE107147.CTCF.HSPC-CD34 127 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 288 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 258 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 201 bp overlap
ChIP HeLa_dC9Sun-D3A_SHB GSE107607.CTCF.HeLa_dC9Sun-D3A_SHB 196 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 248 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 179 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 307 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 141 bp overlap
ChIP K-562 ENCSR000DWE.CTCF.K-562 155 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 244 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.CTCF.K-562_enCRISPRi-LK 190 bp overlap
ChIP K562 ENCFF111MGE 245 bp overlap
ChIP K562 ENCFF598YSU 226 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 221 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 282 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 152 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 114 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 294 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 184 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 161 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 313 bp overlap
ChIP WTC11 ENCFF658QVH 372 bp overlap
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 153 bp overlap
ChIP brain ENCFF685VRG 372 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 281 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 340 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 308 bp overlap
ChIP endodermal cell ENCFF471YCZ 343 bp overlap
ChIP endothelial cell ENCFF663LIE 372 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ALA.CTCF.endothelial_umbilical-vein 191 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 183 bp overlap
ChIP gastrocnemius-medialis ENCSR594NSU.CTCF.gastrocnemius-medialis 260 bp overlap
ChIP hESC GSE20650.CTCF.hESC 109 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 218 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 372 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 233 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 372 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 216 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 234 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 141 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 269 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 215 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 249 bp overlap
ChIP hiPSC_IID12 GSE106870.CTCF.hiPSC_IID12 214 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 158 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 245 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 224 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 257 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 280 bp overlap
ChIP mesothelial cell of epicardium ENCFF427RFE 372 bp overlap
ChIP nephron ENCFF589HXU 372 bp overlap
ChIP nephron progenitor cell ENCFF455DMI 372 bp overlap
ChIP neural progenitor cell ENCFF420RBO 237 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 358 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 263 bp overlap
ChIP parathyroid adenoma ENCFF173CEN 332 bp overlap
ChIP parathyroid adenoma ENCFF173NJK 372 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 212 bp overlap
ChIP retina_AB1-FW14 GSE86981.CTCF.retina_AB1-FW14 372 bp overlap
ChIP retina_AB1-FW16 GSE86981.CTCF.retina_AB1-FW16 372 bp overlap
ChIP retina_AB1-FW18 GSE86981.CTCF.retina_AB1-FW18 224 bp overlap
ChIP retina_AB1-RB GSE86981.CTCF.retina_AB1-RB 258 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 157 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 123 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 144 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 357 bp overlap
ERG 1 dataset
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 213 bp overlap
ESR1 3 datasets
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 283 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 167 bp overlap
ChIP VCaP_E2 GSE43985.ESR1.VCaP_E2 161 bp overlap
EZH2 17 datasets
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 306 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 202 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 372 bp overlap
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 92 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 372 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 372 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 146 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 70 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 372 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 354 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 89 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 340 bp overlap
ChIP keratinocyte ENCFF070STK 372 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 372 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 336 bp overlap
ChIP neural progenitor cell ENCFF472NFV 372 bp overlap
ChIP neural progenitor cell ENCFF472NFV 175 bp overlap
EZH2_phosphoT487 3 datasets
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 93 bp overlap
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 372 bp overlap
ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 261 bp overlap
FOXP1 2 datasets
ChIP H9 GSE31006.FOXP1.H9 237 bp overlap
ChIP WTC11 ENCFF338WGC 331 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 295 bp overlap
GATA3 1 dataset
ChIP MCF-7 GSE60270.GATA3.MCF-7 152 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 235 bp overlap
GTF2F1 1 dataset
ChIP MCF-7 ENCSR557JTZ.GTF2F1.MCF-7 172 bp overlap
JARID2 5 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 356 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 225 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 372 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 372 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 372 bp overlap
JUN 2 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 295 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 204 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 372 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 219 bp overlap
MORC2 1 dataset
ChIP HeLa_V5-HUSH-KO GSE95451.MORC2.HeLa_V5-HUSH-KO 317 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 146 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 262 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 275 bp overlap
OGG1 2 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 372 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 316 bp overlap
PDX1 1 dataset
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 150 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 310 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 276 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 167 bp overlap
RAD21 13 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 89 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 246 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 212 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 234 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 198 bp overlap
ChIP hiPSC_IIA11 GSE106870.RAD21.hiPSC_IIA11 179 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 224 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 242 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 244 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 197 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 252 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 52 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 372 bp overlap
RUNX1 3 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 135 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 135 bp overlap
ChIP Jurkat GSE85524.RUNX1.Jurkat 338 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 192 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 224 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 224 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 87 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 199 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 213 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 233 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 213 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 317 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 177 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 279 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 372 bp overlap
STAG1 1 dataset
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 118 bp overlap
SUZ12 7 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 372 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 126 bp overlap
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 259 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 333 bp overlap
ChIP H1 ENCFF881NFR 372 bp overlap
ChIP H1 ENCFF881NFR 372 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 244 bp overlap
TAF15 2 datasets
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 230 bp overlap
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 209 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 194 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 94 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 284 bp overlap
ZNF143 1 dataset
ChIP WA01 ENCSR000EBW.ZNF143.WA01 119 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 286 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 230 bp overlap
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