chr1 : 171,298,743 171,299,023
280 bp 58 TFs 0 linked genes
This 280 bp open chromatin element has no linked target genes and is bound by 58 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:171,293,743 – 171,304,023
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
58 transcription factors
Source
Cell type
ASCL1 1 dataset
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 162 bp overlap
CREB1 4 datasets
ChIP GM23338 ENCFF432ZEW 280 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 240 bp overlap
ChIP H1 ENCFF955PMP 280 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 239 bp overlap
CTCF 1 dataset
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 158 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 272 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 215 bp overlap
ChIP hESC GSE17917.EP300.hESC 219 bp overlap
ESR1 1 dataset
Motif DE_12h DE_12h-ESR1_MA0112.4 15 bp overlap
ESR2 1 dataset
Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap
FIGLA 2 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXK1 2 datasets
ChIP WTC11 ENCFF875IGU 105 bp overlap
ChIP WTC11 ENCFF875IGU 280 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 203 bp overlap
HDAC2 1 dataset
ChIP H1 ENCFF939VKA 169 bp overlap
JUN 1 dataset
ChIP HUES-8 GSE109524.JUN.HUES-8 159 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 280 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 146 bp overlap
MYBL2 1 dataset
ChIP WTC11 ENCFF166TKT 280 bp overlap
MYOD1 1 dataset
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
NANOG 6 datasets
ChIP GM23338 ENCFF065NZG 253 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 242 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 280 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 280 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 280 bp overlap
ChIP hESC GSE18292.NANOG.hESC 167 bp overlap
NR1D1 1 dataset
Motif DE_12h DE_12h-NR1D1_MA1531.2 14 bp overlap
NR1D2 1 dataset
Motif DE_12h DE_12h-NR1D2_MA1532.2 15 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 208 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 155 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 128 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF566JSR 275 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 276 bp overlap
POU5F1 10 datasets
ChIP GM23338 ENCFF333SNB 275 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 280 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 258 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 224 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 280 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 280 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 280 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 280 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 152 bp overlap
Ptf1A 2 datasets
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
RFX1 1 dataset
Motif DE_12h DE_12h-RFX1_MA0509.3 16 bp overlap
RFX2 1 dataset
Motif DE_12h DE_12h-RFX2_MA0600.3 14 bp overlap
RFX3 1 dataset
Motif DE_12h DE_12h-RFX3_MA0798.3 16 bp overlap
RFX5 1 dataset
Motif DE_12h DE_12h-RFX5_MA0510.3 14 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 255 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 232 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 279 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 253 bp overlap
SNAI1 1 dataset
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
SNAI2 1 dataset
Motif DE_12h DE_12h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
SOX2 3 datasets
ChIP hESC GSE69479.SOX2.hESC 208 bp overlap
ChIP hESC GSE18292.SOX2.hESC 194 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 277 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 272 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 260 bp overlap
TBP 4 datasets
ChIP hESC GSE122298.TBP.hESC 280 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 80 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 120 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 112 bp overlap
TBX1 1 dataset
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
TBX2 1 dataset
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
TBX3 1 dataset
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
TCF12 3 datasets
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
ChIP H1 ENCFF203EBH 247 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 280 bp overlap
TCF3 2 datasets
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
ChIP NPC GSE154479.TCF3.NPC 280 bp overlap
TCF4 1 dataset
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
TEAD4 3 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 170 bp overlap
ChIP H1 ENCFF778PAX 242 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 253 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 139 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 195 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 123 bp overlap
Yy1 1 dataset
Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap
ZEB1 2 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 56 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 252 bp overlap
ZNF675 1 dataset
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap