chr8 : 104,284,246 – 104,285,022
776 bp 71 TFs 1 linked gene
This 776 bp open chromatin element is linked to RIMS2 and is bound by 71 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RIMS2 783.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr8:104,279,246 – 104,290,022
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
71 transcription factors
Source
Cell type
BACH2 1 dataset
Motif DE_24h DE_24h-BACH2_MA1101.3 11 bp overlap
BCL11A 1 dataset
Motif DE_24h DE_24h-BCL11A_MA2324.1 7 bp overlap
CTCF 3 datasets
Motif DE_24h DE_24h-CTCF_MA0139.2 15 bp overlap
Motif DE_36h DE_36h-CTCF_MA0139.2 15 bp overlap
Motif DE_48h DE_48h-CTCF_MA0139.2 15 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 53 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 203 bp overlap
Ebf4 1 dataset
Motif DE_24h DE_24h-Ebf4_MA2122.1 11 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 656 bp overlap
ChIP DE DE-FOXA2-2 504 bp overlap
GATA1::TAL1 3 datasets
Motif DE_24h DE_24h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 1 dataset
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 595 bp overlap
ChIP DE DE-GATA4-2 720 bp overlap
Motif DE_24h DE_24h-GATA4_MA0482.3 8 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 457 bp overlap
GATA5 4 datasets
Motif DE_24h DE_24h-GATA5_MA0766.3 8 bp overlap
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 14 datasets
ChIP DE DE-GATA6-1 694 bp overlap
ChIP DE DE-GATA6-2 665 bp overlap
Motif DE_24h DE_24h-GATA6_MA1104.3 8 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 724 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 665 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 645 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 633 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 673 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 622 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 635 bp overlap
ChIP foregut GSE117136.GATA6.foregut 334 bp overlap
Gata3 4 datasets
Motif DE_24h DE_24h-Gata3_MA0037.5 8 bp overlap
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HAND2 2 datasets
Motif DE_24h DE_24h-HAND2_MA1638.2 6 bp overlap
Motif DE_48h DE_48h-HAND2_MA1638.2 6 bp overlap
HIC2 1 dataset
Motif DE_24h DE_24h-HIC2_MA0738.2 6 bp overlap
HMBOX1 2 datasets
Motif DE_24h DE_24h-HMBOX1_MA0895.2 7 bp overlap
Motif DE_48h DE_48h-HMBOX1_MA0895.2 7 bp overlap
HNF4A 1 dataset
Motif DE_24h DE_24h-HNF4A_MA1494.2 14 bp overlap
HOXB4 1 dataset
Motif DE_24h DE_24h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_24h DE_24h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_24h DE_24h-HOXD4_MA1507.2 6 bp overlap
IRF2 2 datasets
Motif DE_24h DE_24h-IRF2_MA0051.2 16 bp overlap
Motif DE_48h DE_48h-IRF2_MA0051.2 16 bp overlap
IRF3 2 datasets
Motif DE_24h DE_24h-IRF3_MA1418.2 17 bp overlap
Motif DE_48h DE_48h-IRF3_MA1418.2 17 bp overlap
Irf1 2 datasets
Motif DE_24h DE_24h-Irf1_MA0050.4 11 bp overlap
Motif DE_48h DE_48h-Irf1_MA0050.4 11 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 766 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 592 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 737 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 320 bp overlap
KLF4 1 dataset
Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap
MYB 1 dataset
Motif DE_24h DE_24h-MYB_MA0100.4 6 bp overlap
NANOG 8 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 541 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 200 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 151 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 373 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 230 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 242 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 195 bp overlap
ChIP hESC GSE18292.NANOG.hESC 199 bp overlap
NFATC3 2 datasets
Motif DE_24h DE_24h-NFATC3_MA0625.3 6 bp overlap
Motif DE_48h DE_48h-NFATC3_MA0625.3 6 bp overlap
NFE2 1 dataset
Motif DE_24h DE_24h-NFE2_MA0841.2 10 bp overlap
NKX6-3 1 dataset
Motif DE_24h DE_24h-NKX6-3_MA1530.2 8 bp overlap
NR2C2 1 dataset
Motif DE_24h DE_24h-NR2C2_MA0504.2 14 bp overlap
NR5A1 1 dataset
Motif DE_24h DE_24h-NR5A1_MA1540.3 12 bp overlap
Nfatc1 2 datasets
Motif DE_24h DE_24h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_48h DE_48h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 2 datasets
Motif DE_24h DE_24h-Nfatc2_MA0152.3 8 bp overlap
Motif DE_48h DE_48h-Nfatc2_MA0152.3 8 bp overlap
Nr2e3 1 dataset
Motif DE_24h DE_24h-Nr2e3_MA0164.2 6 bp overlap
PGR 1 dataset
Motif DE_24h DE_24h-PGR_MA2327.1 9 bp overlap
POU1F1 2 datasets
Motif DE_24h DE_24h-POU1F1_MA0784.3 14 bp overlap
Motif DE_48h DE_48h-POU1F1_MA0784.3 14 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 333 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 148 bp overlap
POU6F1 1 dataset
Motif DE_24h DE_24h-POU6F1_MA1549.2 7 bp overlap
POU6F2 1 dataset
Motif DE_24h DE_24h-POU6F2_MA0793.2 9 bp overlap
PRDM1 1 dataset
Motif DE_24h DE_24h-PRDM1_MA0508.4 7 bp overlap
Prdm14 1 dataset
Motif DE_24h DE_24h-Prdm14_MA1998.2 8 bp overlap
SMAD2 2 datasets
Motif DE_48h DE_48h-SMAD2_MA1964.2 6 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 141 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 776 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 776 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 761 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 776 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 776 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 776 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 776 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 776 bp overlap
SMAD3 1 dataset
Motif DE_48h DE_48h-SMAD3_MA0795.1 10 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 167 bp overlap
SMAD5 1 dataset
Motif DE_48h DE_48h-SMAD5_MA1557.1 10 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 159 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S10-DE-d1-BAF155-exp1 303 bp overlap
SOX15 5 datasets
Motif DE_12h DE_12h-SOX15_MA1152.2 7 bp overlap
Motif DE_24h DE_24h-SOX15_MA1152.2 7 bp overlap
Motif DE_36h DE_36h-SOX15_MA1152.2 7 bp overlap
Motif DE_48h DE_48h-SOX15_MA1152.2 7 bp overlap
Motif DE_72h DE_72h-SOX15_MA1152.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 316 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 753 bp overlap
SOX2 2 datasets
ChIP hiPSC GSE56567.SOX2.hiPSC 235 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 177 bp overlap
STAT1::STAT2 2 datasets
Motif DE_24h DE_24h-STAT1STAT2_MA0517.2 13 bp overlap
Motif DE_48h DE_48h-STAT1STAT2_MA0517.2 13 bp overlap
Sox6 5 datasets
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Motif DE_24h DE_24h-Sox6_MA0515.1 10 bp overlap
Motif DE_36h DE_36h-Sox6_MA0515.1 10 bp overlap
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
Stat2 2 datasets
Motif DE_24h DE_24h-Stat2_MA1623.2 10 bp overlap
Motif DE_48h DE_48h-Stat2_MA1623.2 10 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 279 bp overlap
TEAD4 3 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 308 bp overlap
ChIP H1 ENCFF778PAX 104 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 270 bp overlap
THAP1 1 dataset
Motif DE_24h DE_24h-THAP1_MA0597.3 8 bp overlap
TRIM28 2 datasets
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 290 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 240 bp overlap
TRPS1 4 datasets
Motif DE_24h DE_24h-TRPS1_MA1970.2 8 bp overlap
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 135 bp overlap
ZNF184 1 dataset
Motif DE_48h DE_48h-ZNF184_MA2120.1 13 bp overlap
ZNF384 1 dataset
Motif DE_24h DE_24h-ZNF384_MA1125.2 8 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 266 bp overlap
ZNF675 1 dataset
Motif DE_24h DE_24h-ZNF675_MA1714.2 19 bp overlap
ZNF677 2 datasets
Motif DE_24h DE_24h-ZNF677_MA2101.1 12 bp overlap
Motif DE_48h DE_48h-ZNF677_MA2101.1 12 bp overlap
ZNF75D 1 dataset
Motif DE_24h DE_24h-ZNF75D_MA1601.2 12 bp overlap
ZNF766 3 datasets
Motif DE_24h DE_24h-ZNF766_MA2098.1 9 bp overlap
Motif DE_48h DE_48h-ZNF766_MA2098.1 9 bp overlap
Motif DE_72h DE_72h-ZNF766_MA2098.1 9 bp overlap
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