chr8 : 56,047,884 – 56,048,188

304 bp 68 TFs 0 linked genes

This 304 bp open chromatin element has no linked target genes and is bound by 68 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

68 transcription factors

CEBPB 1 dataset

ChIP WA01 ENCSR000EBV.CEBPB.WA01 132 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF896HSY 226 bp overlap

Crx 1 dataset

Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap

DDX5 1 dataset

ChIP NTERA2 GSE58641.DDX5.NTERA2 207 bp overlap

E2F6 2 datasets

ChIP H1 ENCFF785DWK 304 bp overlap

ChIP WA01 ENCSR000BSI.E2F6.WA01 216 bp overlap

EOMES 1 dataset

Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap

EP300 1 dataset

ChIP WA01 ENCSR000BKK.EP300.WA01 171 bp overlap

FIGLA 1 dataset

Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap

Foxq1 1 dataset

Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap

GSC 1 dataset

Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap

GSC2 1 dataset

Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap

GTF2I 1 dataset

ChIP WTC11 ENCFF255XXZ 79 bp overlap

GTF3C2 1 dataset

ChIP H9 GSE94418.GTF3C2.H9 148 bp overlap

HOXB13 1 dataset

Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap

HOXC13 1 dataset

Motif DE_12h DE_12h-HOXC13_MA0907.2 9 bp overlap

JUN 4 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 254 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 300 bp overlap

ChIP ESC S24-ESC-d0-JUN-exp1 203 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 258 bp overlap

KLF4 2 datasets

Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap

ChIP hiPSC GSE56567.KLF4.hiPSC 243 bp overlap

MGA 1 dataset

Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap

MGA::EVX1 1 dataset

Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap

NANOG 7 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 242 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 256 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 164 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 304 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 226 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 114 bp overlap

ChIP hESC GSE18292.NANOG.hESC 93 bp overlap

NFKB1 1 dataset

Motif DE_12h DE_12h-NFKB1_MA0105.4 13 bp overlap

NFYA 1 dataset

Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap

NFYC 1 dataset

Motif DE_12h DE_12h-NFYC_MA1644.2 7 bp overlap

NR1D1 1 dataset

Motif DE_12h DE_12h-NR1D1_MA1531.2 14 bp overlap

NR1D2 2 datasets

Motif DE_12h DE_12h-NR1D2_MA1532.2 15 bp overlap

Nr1h3::Rxra 1 dataset

Motif DE_12h DE_12h-Nr1h3Rxra_MA0494.2 16 bp overlap

Nr2F6 1 dataset

Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap

OTX1 1 dataset

Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap

OTX2 1 dataset

Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap

PITX1 1 dataset

Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap

PITX3 1 dataset

Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap

PLAG1 1 dataset

Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap

POU2F1::SOX2 1 dataset

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

POU5F1 7 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 261 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 304 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 304 bp overlap

ChIP WA01 ENCSR000BMU.POU5F1.WA01 188 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 248 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 262 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 170 bp overlap

PRDM9 1 dataset

Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

REST 1 dataset

ChIP GM23338 ENCFF024TCL 264 bp overlap

RHOXF1 1 dataset

Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap

Rarb 1 dataset

Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap

Rarg 1 dataset

Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap

SMARCA4 2 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 195 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 142 bp overlap

SOX2 1 dataset

ChIP hiPSC GSE56567.SOX2.hiPSC 275 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 143 bp overlap

SP5 2 datasets

Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap

SREBF1 1 dataset

Motif DE_12h DE_12h-SREBF1_MA0829.3 10 bp overlap

SREBF2 1 dataset

Motif DE_12h DE_12h-SREBF2_MA0828.3 10 bp overlap

TBP 6 datasets

Motif DE_12h DE_12h-TBP_MA0108.3 7 bp overlap

ChIP WA01 ENCSR000ECB.TBP.WA01 187 bp overlap

ChIP hESC GSE122298.TBP.hESC 157 bp overlap

ChIP hESC_10h GSE122298.TBP.hESC_10h 119 bp overlap

ChIP hESC_2h GSE122298.TBP.hESC_2h 121 bp overlap

ChIP hESC_8h GSE122298.TBP.hESC_8h 142 bp overlap

TBR1 1 dataset

Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap

TBX1 1 dataset

Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap

TBX15 1 dataset

Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap

TBX18 1 dataset

Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap

TBX2 1 dataset

Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap

TBX20 1 dataset

Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap

TBX21 1 dataset

Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap

TBX3 1 dataset

Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap

TBX5 1 dataset

Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap

Tbx6 1 dataset

Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap

USF1 1 dataset

ChIP WA01 ENCSR000BIU.USF1.WA01 141 bp overlap

ZBTB6 1 dataset

Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap

ZEB1 1 dataset

Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap

ZKSCAN5 2 datasets

Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap

ZNF135 1 dataset

Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap

ZNF24 1 dataset

Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap

ZNF354C 1 dataset

Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap

ZNF460 1 dataset

Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap

ZNF667 1 dataset

Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap

ZSCAN4 1 dataset

Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap

Zfp809 1 dataset

Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap