chr7 : 140,278,313 140,279,187
874 bp 65 TFs 3 linked genes
This 874 bp open chromatin element is linked to KDM7A, SLC37A3, and MKRN1 and is bound by 65 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
KDM7A 101.8 kb Distal Multiome
SLC37A3 119.7 kb Distal Multiome
MKRN1 200.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:140,273,313 – 140,284,187
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
ATF2 1 dataset
Motif DE_60h DE_60h-ATF2_MA1632.2 10 bp overlap
ATF4 1 dataset
Motif DE_60h DE_60h-ATF4_MA0833.3 10 bp overlap
DMRTA2 1 dataset
Motif DE_72h DE_72h-DMRTA2_MA1478.2 6 bp overlap
DUX4 4 datasets
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
ChIP HEK293 GSE75791.DUX4.HEK293 319 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 403 bp overlap
DUXA 1 dataset
Motif DE_60h DE_60h-DUXA_MA0884.2 13 bp overlap
Dux 4 datasets
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
Motif DE_72h DE_72h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 334 bp overlap
FOS::JUN 1 dataset
Motif DE_60h DE_60h-FOSJUN_MA1126.2 10 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 616 bp overlap
ChIP DE DE-FOXA2-2 652 bp overlap
FOXE1 1 dataset
Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap
FOXN3 1 dataset
Motif DE_60h DE_60h-FOXN3_MA1489.1 8 bp overlap
GATA1 2 datasets
Motif DE_72h DE_72h-GATA1_MA0035.5 7 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 273 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 169 bp overlap
GATA3 3 datasets
ChIP MCF-7 GSE122847.GATA3.MCF-7 206 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 180 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 237 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 747 bp overlap
ChIP DE DE-GATA4-2 870 bp overlap
ChIP foregut GSE117136.GATA4.foregut 604 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 671 bp overlap
ChIP DE DE-GATA6-2 759 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 682 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 407 bp overlap
ChIP foregut GSE117136.GATA6.foregut 574 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 302 bp overlap
Gfi1B 1 dataset
Motif DE_72h DE_72h-Gfi1B_MA0483.2 10 bp overlap
HMBOX1 1 dataset
Motif DE_72h DE_72h-HMBOX1_MA0895.2 7 bp overlap
JUN 2 datasets
Motif DE_60h DE_60h-JUN_MA0488.2 10 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 275 bp overlap
LHX6 1 dataset
Motif DE_60h DE_60h-LHX6_MA0658.2 8 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MYB 1 dataset
Motif DE_72h DE_72h-MYB_MA0100.4 6 bp overlap
Mecom 1 dataset
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
NKX2-4 1 dataset
Motif DE_72h DE_72h-NKX2-4_MA2003.2 8 bp overlap
NRL 1 dataset
Motif DE_60h DE_60h-NRL_MA0842.3 12 bp overlap
PAX3 1 dataset
Motif DE_72h DE_72h-PAX3_MA1546.2 14 bp overlap
PAX5 1 dataset
Motif DE_72h DE_72h-PAX5_MA0014.4 8 bp overlap
PHOX2A 1 dataset
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 2 datasets
Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap
POU1F1 1 dataset
Motif DE_60h DE_60h-POU1F1_MA0784.3 14 bp overlap
POU3F3 1 dataset
Motif DE_60h DE_60h-POU3F3_MA0788.1 13 bp overlap
PRDM1 2 datasets
Motif DE_60h DE_60h-PRDM1_MA0508.4 7 bp overlap
Motif DE_72h DE_72h-PRDM1_MA0508.4 7 bp overlap
PRDM9 1 dataset
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
PROP1 1 dataset
Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap
Ptf1A 1 dataset
Motif DE_60h DE_60h-Ptf1A_MA1618.2 9 bp overlap
RARA 1 dataset
Motif DE_72h DE_72h-RARA_MA0729.1 18 bp overlap
Rarb 1 dataset
Motif DE_72h DE_72h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_72h DE_72h-Rarg_MA0859.2 15 bp overlap
Rfx6 1 dataset
Motif DE_72h DE_72h-Rfx6_MA1724.2 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 373 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 399 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 364 bp overlap
SOX13 2 datasets
Motif DE_72h DE_72h-SOX13_MA1120.2 7 bp overlap
Motif DE_72h DE_72h-SOX13_MA1120.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 485 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 697 bp overlap
SOX2 2 datasets
Motif DE_72h DE_72h-SOX2_MA0143.5 7 bp overlap
Motif DE_72h DE_72h-SOX2_MA0143.5 7 bp overlap
SOX21 1 dataset
Motif DE_72h DE_72h-SOX21_MA0866.1 15 bp overlap
SP5 2 datasets
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
Sox3 2 datasets
Motif DE_72h DE_72h-Sox3_MA0514.3 7 bp overlap
Motif DE_72h DE_72h-Sox3_MA0514.3 7 bp overlap
Sox5 1 dataset
Motif DE_72h DE_72h-Sox5_MA0087.3 8 bp overlap
Stat2 2 datasets
Motif DE_60h DE_60h-Stat2_MA1623.2 10 bp overlap
Motif DE_72h DE_72h-Stat2_MA1623.2 10 bp overlap
Stat6 1 dataset
Motif DE_72h DE_72h-Stat6_MA0520.2 10 bp overlap
TRPS1 1 dataset
ChIP T-47D GSE107013.TRPS1.T-47D 114 bp overlap
ZNF189 1 dataset
Motif DE_72h DE_72h-ZNF189_MA1725.2 9 bp overlap
ZNF263 1 dataset
Motif DE_72h DE_72h-ZNF263_MA0528.3 7 bp overlap
ZNF316 2 datasets
ChIP K-562 ENCSR200JYP.ZNF316.K-562 283 bp overlap
ChIP K562 ENCFF281INV 130 bp overlap
ZNF320 1 dataset
Motif DE_72h DE_72h-ZNF320_MA1976.2 20 bp overlap
ZNF354A 1 dataset
Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap
ZNF382 1 dataset
Motif DE_72h DE_72h-ZNF382_MA1594.1 24 bp overlap
ZNF530 2 datasets
Motif DE_60h DE_60h-ZNF530_MA1981.2 14 bp overlap
Motif DE_72h DE_72h-ZNF530_MA1981.2 14 bp overlap
ZNF692 1 dataset
Motif DE_60h DE_60h-ZNF692_MA1986.2 8 bp overlap
ZNF85 1 dataset
Motif DE_60h DE_60h-ZNF85_MA1720.2 12 bp overlap