chr7 : 3,264,672 3,265,328
656 bp 79 TFs 3 linked genes
This 656 bp open chromatin element is linked to SDK1, CARD11, and AP5Z1 and is bound by 79 transcription factors.
Linked Genes
3 genes
Link type
Gene Expression Dist. to TSS Distance Link type
SDK1 36.4 kb Distal Multiome
CARD11 221.1 kb Distal Multiome
AP5Z1 1510.7 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:3,259,672 – 3,270,328
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
79 transcription factors
Source
Cell type
AHR 4 datasets
ChIP MCF-7_DMSO_1d GSE90550.AHR.MCF-7_DMSO_1d 141 bp overlap
ChIP MCF-7_DMSO_45min GSE90550.AHR.MCF-7_DMSO_45min 171 bp overlap
ChIP MCF-7_TCDD_1d GSE90550.AHR.MCF-7_TCDD_1d 220 bp overlap
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 351 bp overlap
AR 12 datasets
ChIP LAPC-4_R1881 GSE148358.AR.LAPC-4_R1881 278 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 239 bp overlap
ChIP LNCaP_ETOH GSE69043.AR.LNCaP_ETOH 175 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 222 bp overlap
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 140 bp overlap
ChIP LNCaP_SHGATA2_ETOH GSE69043.AR.LNCaP_SHGATA2_ETOH 189 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 210 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 188 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 256 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 191 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 174 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 313 bp overlap
ARID1A 2 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 352 bp overlap
ChIP NGP GSE134626.ARID1A.NGP 124 bp overlap
Arid3a 1 dataset
Motif DE_72h DE_72h-Arid3a_MA0151.1 6 bp overlap
Bcl11B 2 datasets
Motif DE_72h DE_72h-Bcl11B_MA1989.2 9 bp overlap
Motif DE_72h DE_72h-Bcl11B_MA1989.2 9 bp overlap
CRY1 2 datasets
ChIP U2OS GSE130602.CRY1.U2OS 149 bp overlap
ChIP U2OS_DMSO GSE130506.CRY1.U2OS_DMSO 150 bp overlap
DPRX 1 dataset
Motif DE_72h DE_72h-DPRX_MA1480.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 581 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 132 bp overlap
ESR1 3 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 279 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 279 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 157 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 351 bp overlap
EZH2 3 datasets
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 467 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 308 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 608 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 438 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 313 bp overlap
FOXA1 9 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 261 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 381 bp overlap
ChIP LNCaP GSE52725.FOXA1.LNCaP 136 bp overlap
ChIP LNCaP_1F5 GSE30623.FOXA1.LNCaP_1F5 133 bp overlap
ChIP LNCaP_DHT GSE28264.FOXA1.LNCaP_DHT 145 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 462 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 261 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 142 bp overlap
ChIP prostate_P23_T GSE130408.FOXA1.prostate_P23_T 159 bp overlap
FOXA2 6 datasets
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 269 bp overlap
ChIP DE DE-FOXA2-1 656 bp overlap
ChIP DE DE-FOXA2-2 656 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 656 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 656 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 656 bp overlap
FOXC2 2 datasets
Motif DE_72h DE_72h-FOXC2_MA0846.2 11 bp overlap
Motif DE_72h DE_72h-FOXC2_MA0846.2 11 bp overlap
FOXE1 1 dataset
Motif DE_72h DE_72h-FOXE1_MA1487.3 12 bp overlap
FOXP2 1 dataset
Motif DE_72h DE_72h-FOXP2_MA0593.2 9 bp overlap
GATA2 6 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 270 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 270 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 200 bp overlap
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 228 bp overlap
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 358 bp overlap
GATA3 10 datasets
ChIP MCF-7 ENCFF178GBS 304 bp overlap
ChIP MCF-7 ENCFF352QVM 445 bp overlap
ChIP MCF-7 ENCFF437NQS 360 bp overlap
ChIP MCF-7 ENCSR000EWS.GATA3.MCF-7 237 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 494 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 191 bp overlap
ChIP MCF-7_E2 GSE29073.GATA3.MCF-7_E2 115 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 181 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 261 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 206 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 278 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 307 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 656 bp overlap
ChIP DE DE-GATA4-2 656 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 239 bp overlap
ChIP foregut GSE117136.GATA4.foregut 270 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 214 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 225 bp overlap
GATA6 8 datasets
ChIP AGS GSE51936.GATA6.AGS 94 bp overlap
ChIP DE DE-GATA6-1 656 bp overlap
ChIP DE DE-GATA6-2 656 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 345 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 480 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 610 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 414 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 622 bp overlap
HIF1A 1 dataset
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.HIF1A.LNCaP_androgen-N_hypoxia-Y 187 bp overlap
HNF1B 1 dataset
ChIP PANC-1_HNF1B-OE GSE119930.HNF1B.PANC-1_HNF1B-OE 624 bp overlap
HNF4A 1 dataset
Motif DE_72h DE_72h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif DE_72h DE_72h-HNF4G_MA0484.3 9 bp overlap
HOXA10 1 dataset
Motif DE_72h DE_72h-HOXA10_MA0899.2 9 bp overlap
HOXB13 7 datasets
ChIP 22Rv1 GSE96652.HOXB13.22Rv1 294 bp overlap
Motif DE_72h DE_72h-HOXB13_MA0901.3 9 bp overlap
ChIP LNCaP GSE56288.HOXB13.LNCaP 178 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 116 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 152 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 157 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 183 bp overlap
HOXB8 1 dataset
ChIP PANC-1 GSE119930.HOXB8.PANC-1 656 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 239 bp overlap
HOXD9 1 dataset
Motif DE_72h DE_72h-HOXD9_MA0913.3 9 bp overlap
Isl1 1 dataset
Motif DE_72h DE_72h-Isl1_MA1608.2 7 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 287 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS_E2 GSE60270.MED1.MCF-7_SHRARS_E2 105 bp overlap
MEF2A 1 dataset
Motif DE_72h DE_72h-MEF2A_MA0052.5 10 bp overlap
MEF2B 1 dataset
Motif DE_72h DE_72h-MEF2B_MA0660.1 12 bp overlap
MEF2C 1 dataset
Motif DE_72h DE_72h-MEF2C_MA0497.2 11 bp overlap
MEF2D 1 dataset
Motif DE_72h DE_72h-MEF2D_MA0773.1 12 bp overlap
Mecom 1 dataset
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
NANOG 1 dataset
ChIP LNCaP_pNanog1_Dox GSE74799.NANOG.LNCaP_pNanog1_Dox 153 bp overlap
NKX6-3 1 dataset
Motif DE_72h DE_72h-NKX6-3_MA1530.2 8 bp overlap
NR1I3 1 dataset
Motif DE_72h DE_72h-NR1I3_MA1534.2 8 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 194 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 519 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 196 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 105 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 534 bp overlap
POLR2A 1 dataset
ChIP Panc1 ENCFF290KAB 232 bp overlap
RARB 1 dataset
Motif DE_72h DE_72h-RARB_MA1552.2 13 bp overlap
RARG 1 dataset
Motif DE_72h DE_72h-RARG_MA1553.2 13 bp overlap
RREB1 1 dataset
Motif DE_72h DE_72h-RREB1_MA0073.2 19 bp overlap
RXRB 1 dataset
Motif DE_72h DE_72h-RXRB_MA1555.1 14 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 175 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 656 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 520 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 336 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 120 bp overlap
SMARCA4 3 datasets
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 380 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 169 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 506 bp overlap
SMC1A 1 dataset
ChIP MCF-7_EtOH GSE115602.SMC1A.MCF-7_EtOH 159 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 621 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 656 bp overlap
SOX2 2 datasets
ChIP HCC2814 GSE137459.SOX2.HCC2814 322 bp overlap
ChIP HCC95 GSE137459.SOX2.HCC95 466 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 262 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 389 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_W164A GSE139053.SS18-SSX.fibroblast_W164A 191 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 381 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 292 bp overlap
TCF7L2 2 datasets
ChIP PANC-1 ENCSR000EXL.TCF7L2.PANC-1 653 bp overlap
ChIP Panc1 ENCFF829HHL 504 bp overlap
TLE3 1 dataset
ChIP LNCaP GSE94682.TLE3.LNCaP 480 bp overlap
ZEB2 3 datasets
ChIP HEK293 ENCFF847JIE 522 bp overlap
ChIP HEK293 ENCFF847JIE 323 bp overlap
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 380 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 186 bp overlap
ZNF418 1 dataset
Motif DE_72h DE_72h-ZNF418_MA1980.1 15 bp overlap
ZNF626 1 dataset
ChIP HEK293 ENCFF633URH 321 bp overlap
ZNF667 1 dataset
Motif DE_72h DE_72h-ZNF667_MA1984.2 11 bp overlap
ZSCAN16 2 datasets
ChIP HEK293 ENCFF533NFT 342 bp overlap
ChIP HEK293 ENCSR864VJE.ZSCAN16.HEK293 315 bp overlap
ZXDB 2 datasets
ChIP HEK293 ENCFF835SGA 478 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 341 bp overlap