chr6 : 130,223,543 130,223,918
375 bp 49 TFs 1 linked gene
This 375 bp open chromatin element is linked to SAMD3 and is bound by 49 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SAMD3 7.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:130,218,543 – 130,228,918
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
49 transcription factors
Source
Cell type
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 181 bp overlap
BATF 3 datasets
ChIP BC-3 GSE132777.BATF.BC-3 216 bp overlap
ChIP GM12878 ENCFF954REE 227 bp overlap
ChIP OCI-Ly10 GSE56857.BATF.OCI-Ly10 246 bp overlap
BATF3 1 dataset
ChIP KK-1_BirA GSE94732.BATF3.KK-1_BirA 135 bp overlap
BATF_GFP 1 dataset
ChIP CD4_T-cell_d1_GFP-BATF_anti-GFP GSE108600.BATF_GFP.CD4_T-cell_d1_GFP-BATF_anti-GFP 187 bp overlap
BCLAF1 1 dataset
ChIP GM12878 ENCFF306JRM 375 bp overlap
BHLHE40 4 datasets
ChIP GM12878 ENCFF010ZUU 303 bp overlap
ChIP GM12878 ENCFF521IZR 243 bp overlap
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 285 bp overlap
ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 255 bp overlap
BRD4 8 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 292 bp overlap
ChIP GM15850_PA1_JQ1 GSE99402.BRD4.GM15850_PA1_JQ1 198 bp overlap
ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 166 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 193 bp overlap
ChIP T-cell_DMSO GSE138084.BRD4.T-cell_DMSO 231 bp overlap
ChIP T-cell_iBET GSE138084.BRD4.T-cell_iBET 179 bp overlap
ChIP T-cell_iBET-BD1 GSE138084.BRD4.T-cell_iBET-BD1 171 bp overlap
ChIP T-cell_iBET-BD2 GSE138084.BRD4.T-cell_iBET-BD2 183 bp overlap
CBX3 2 datasets
ChIP HCT-116 ENCSR000BUH.CBX3.HCT-116 130 bp overlap
ChIP HCT116 ENCFF947BOL 375 bp overlap
CREB1 1 dataset
ChIP GM12878 ENCFF870CVH 325 bp overlap
CREM 1 dataset
ChIP GM12878 ENCSR839XZU.CREM.GM12878 149 bp overlap
CRX 1 dataset
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 270 bp overlap
CTCF 149 datasets
ChIP B cell ENCFF500PZO 375 bp overlap
ChIP B cell ENCFF506FKC 181 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 375 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 291 bp overlap
ChIP CD8-positive, alpha-beta T cell ENCFF092PSD 375 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 248 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 332 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 288 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 238 bp overlap
ChIP GM06990 ENCFF471OQT 297 bp overlap
ChIP GM06990 ENCSR000DQW.CTCF.GM06990 242 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 281 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 289 bp overlap
ChIP GM10266 ENCFF241YYF 177 bp overlap
ChIP GM12864 ENCFF357DQE 285 bp overlap
ChIP GM12864 ENCSR000DRB.CTCF.GM12864 262 bp overlap
ChIP GM12865 ENCFF067GFI 257 bp overlap
ChIP GM12865 ENCSR000DRE.CTCF.GM12865 226 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 250 bp overlap
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 234 bp overlap
ChIP GM12868 ENCSR000DRI.CTCF.GM12868 198 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 279 bp overlap
ChIP GM12870 ENCSR000DRK.CTCF.GM12870 186 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 197 bp overlap
ChIP GM12872 ENCFF697BYI 285 bp overlap
ChIP GM12872 ENCSR000DRN.CTCF.GM12872 204 bp overlap
ChIP GM12873 ENCFF711LOS 154 bp overlap
ChIP GM12873 ENCSR000DRP.CTCF.GM12873 315 bp overlap
ChIP GM12874 ENCFF942MTD 261 bp overlap
ChIP GM12874 ENCSR000DRR.CTCF.GM12874 159 bp overlap
ChIP GM12875 ENCFF081UCQ 257 bp overlap
ChIP GM12875 ENCSR000DRU.CTCF.GM12875 214 bp overlap
ChIP GM12878 ENCFF217EAX 350 bp overlap
ChIP GM12878 ENCFF485TGR 251 bp overlap
ChIP GM12878 ENCFF511URZ 205 bp overlap
ChIP GM12878 ENCFF635MMB 217 bp overlap
ChIP GM12878 GSE76922.CTCF.GM12878 332 bp overlap
ChIP GM12878 ENCSR000AKB.CTCF.GM12878 216 bp overlap
ChIP GM12878 ENCSR000DRZ.CTCF.GM12878 168 bp overlap
ChIP GM12878 ENCSR000DKV.CTCF.GM12878 179 bp overlap
ChIP GM12878 ERP002246.CTCF.GM12878 160 bp overlap
ChIP GM12878 ENCSR000DZN.CTCF.GM12878 118 bp overlap
ChIP GM13976 ENCFF896BYT 161 bp overlap
ChIP GM13977 ENCFF528ESQ 171 bp overlap
ChIP GM13977 ENCSR000DLB.CTCF.GM13977 146 bp overlap
ChIP GM17942 GSE76922.CTCF.GM17942 375 bp overlap
ChIP GM20000 ENCFF218HKS 165 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP H9 ENCFF152GTF 375 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 344 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 173 bp overlap
ChIP HCT116 ENCFF003KHP 359 bp overlap
ChIP HCT116 ENCFF003KHP 237 bp overlap
ChIP HCT116 ENCFF209YMI 285 bp overlap
ChIP HFFc6 ENCFF005CJI 375 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 210 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 118 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 107 bp overlap
ChIP HepG2 ENCFF127KUP 231 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 375 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 221 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 163 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 141 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 119 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 223 bp overlap
ChIP K562 ENCFF082GOI 185 bp overlap
ChIP K562 ENCFF111MGE 245 bp overlap
ChIP K562 ENCFF400DFR 241 bp overlap
ChIP KMS-11 ENCFF853JKX 375 bp overlap
ChIP KMS-11_NSD2-High GSE131651.CTCF.KMS-11_NSD2-High 145 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 195 bp overlap
ChIP NB4 ENCFF155DNY 251 bp overlap
ChIP NCI-H929 ENCFF305JAB 375 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 375 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 374 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 332 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 161 bp overlap
ChIP Peyer's patch ENCFF828IDE 341 bp overlap
ChIP Peyers-patch ENCSR799WDT.CTCF.Peyers-patch 178 bp overlap
ChIP RWPE2 ENCFF911IEE 375 bp overlap
ChIP T-cell GSE115893.CTCF.T-cell 314 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 288 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 226 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 200 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 171 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 201 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 267 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-120m-Flavo-000m 173 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 259 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 298 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 200 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-0h 297 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-4h 241 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-7h-Flavo-3h 279 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-0h 190 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-4h 245 bp overlap
ChIP THP-1_siNIPBL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siNIPBL-NS1-Pam3csk-4h 202 bp overlap
ChIP THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h 261 bp overlap
ChIP THP-1_siNIPBL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siNIPBL-eGFP-Pam3csk-4h 203 bp overlap
ChIP THP-1_siWAPL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-eGFP-Pam3csk-4h 217 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 375 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 249 bp overlap
ChIP activated CD8-positive, alpha-beta T cell ENCFF006MHW 375 bp overlap
ChIP activated CD8-positive, alpha-beta T cell ENCFF006MHW 206 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 281 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 304 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 170 bp overlap
ChIP esophagus squamous epithelium ENCFF037IYT 375 bp overlap
ChIP esophagus squamous epithelium ENCFF700BXI 375 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 304 bp overlap
ChIP esophagus_squamous-epithelium ENCSR838RUX.CTCF.esophagus_squamous-epithelium 287 bp overlap
ChIP fetal_erythroblasts GSE102184.CTCF.fetal_erythroblasts 194 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 299 bp overlap
ChIP heart right ventricle ENCFF767XJQ 375 bp overlap
ChIP heart right ventricle ENCFF767XJQ 210 bp overlap
ChIP keratinocyte ENCFF046PBT 185 bp overlap
ChIP keratinocyte ENCFF291YDC 185 bp overlap
ChIP keratinocyte ENCFF667ULX 313 bp overlap
ChIP keratinocyte ENCFF805QIE 358 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 298 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 187 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 156 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 319 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 180 bp overlap
ChIP lung_left_upper-lobe ENCSR972LYL.CTCF.lung_left_upper-lobe 264 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 375 bp overlap
ChIP natural killer cell ENCFF517SNI 375 bp overlap
ChIP plasmablast GSE142493.CTCF.plasmablast 261 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 194 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 271 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 249 bp overlap
ChIP spleen ENCFF065CBS 375 bp overlap
ChIP spleen ENCFF326DUY 375 bp overlap
ChIP spleen ENCFF326DUY 288 bp overlap
ChIP spleen ENCFF520HPZ 375 bp overlap
ChIP spleen ENCFF643KOU 311 bp overlap
ChIP spleen ENCFF653ONC 375 bp overlap
ChIP spleen ENCFF954DQD 375 bp overlap
ChIP spleen ENCSR601FEB.CTCF.spleen 291 bp overlap
ChIP spleen ENCSR225YGX.CTCF.spleen 277 bp overlap
ChIP spleen ENCSR343RJH.CTCF.spleen 288 bp overlap
ChIP spleen ENCSR482PMN.CTCF.spleen 306 bp overlap
ChIP spleen ENCSR595BPR.CTCF.spleen 323 bp overlap
ChIP spleen ENCSR028YEV.CTCF.spleen 227 bp overlap
ChIP upper lobe of left lung ENCFF374MAK 375 bp overlap
CTCFL 2 datasets
ChIP K562 ENCFF883NXC 171 bp overlap
ChIP OVCAR-8 GSE70764.CTCFL.OVCAR-8 140 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 251 bp overlap
EBF1 3 datasets
ChIP GM12878 ENCFF167CZS 321 bp overlap
ChIP GM12878 ENCFF813OXE 265 bp overlap
ChIP GM12878 ENCSR000DZQ.EBF1.GM12878 122 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR841NDX.ELF1.GM12878 156 bp overlap
ETV6 2 datasets
ChIP GM12878 ENCFF105ZMI 319 bp overlap
ChIP GM12878 ENCSR626VUC.ETV6.GM12878 184 bp overlap
IKZF1 3 datasets
ChIP GM12878 ENCFF753XDO 375 bp overlap
ChIP GM12878 ENCFF824TGK 375 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 242 bp overlap
IRF4 11 datasets
ChIP B-cell GSE142493.IRF4.B-cell 270 bp overlap
ChIP BC-3 GSE132777.IRF4.BC-3 290 bp overlap
ChIP GM12878 ENCFF769ZDL 181 bp overlap
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 257 bp overlap
ChIP KK-1 GSE94732.IRF4.KK-1 106 bp overlap
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 186 bp overlap
ChIP NCI-H929 GSE142493.IRF4.NCI-H929 183 bp overlap
ChIP OCI-Ly10 GSE142493.IRF4.OCI-Ly10 202 bp overlap
ChIP OCI-Ly3_SHCTR GSE56857.IRF4.OCI-Ly3_SHCTR 255 bp overlap
ChIP T-cell GSE136853.IRF4.T-cell 375 bp overlap
ChIP plasmablast GSE142493.IRF4.plasmablast 231 bp overlap
IRF8 1 dataset
ChIP THP-1 GSE123872.IRF8.THP-1 190 bp overlap
JUN 2 datasets
ChIP Karpas-299 GSE151413.JUN.Karpas-299 205 bp overlap
ChIP T-cell GSE136853.JUN.T-cell 292 bp overlap
JUNB 3 datasets
ChIP CD4 GSE116695.JUNB.CD4 267 bp overlap
ChIP GM12878 ENCFF667EJQ 224 bp overlap
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 252 bp overlap
JUND 3 datasets
ChIP GM12878 ENCFF086GAB 266 bp overlap
ChIP GM12878 ENCSR000EYV.JUND.GM12878 128 bp overlap
ChIP GM12878 ENCSR000DYS.JUND.GM12878 130 bp overlap
KLF1 3 datasets
ChIP HEK293 ENCFF159QSW 218 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 257 bp overlap
ChIP HEK293 GSE76494.KLF1.HEK293 182 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 210 bp overlap
KLF4 1 dataset
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 142 bp overlap
KMT2A 1 dataset
ChIP blood_cord GSE83671.KMT2A.blood_cord 230 bp overlap
MAF 2 datasets
ChIP CD4_TH2 GSE72266.MAF.CD4_TH2 127 bp overlap
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 169 bp overlap
MEF2A 1 dataset
ChIP GM12878 ENCSR000BKB.MEF2A.GM12878 163 bp overlap
MYB 1 dataset
ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 188 bp overlap
MYC 1 dataset
ChIP P493-6 GSE77061.MYC.P493-6 146 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 188 bp overlap
NFKB2 1 dataset
ChIP L1236 GSE63736.NFKB2.L1236 210 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 238 bp overlap
PAX5 2 datasets
ChIP GM12878 ENCFF482PUW 251 bp overlap
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 165 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 126 bp overlap
RAD21 2 datasets
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 146 bp overlap
ChIP lymphoblast GSE155324.RAD21.lymphoblast 375 bp overlap
RELA 3 datasets
ChIP BJAB_1h-activation GSE117250.RELA.BJAB_1h-activation 144 bp overlap
ChIP GM12878 ENCSR000EAG.RELA.GM12878 144 bp overlap
ChIP GM12891 ENCSR000EAI.RELA.GM12891 229 bp overlap
RELB 3 datasets
ChIP GM12878 ENCFF217ADF 375 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 280 bp overlap
ChIP L1236 GSE63736.RELB.L1236 115 bp overlap
SMC3 1 dataset
ChIP GM12878 ENCFF085RLZ 271 bp overlap
SRF 2 datasets
ChIP GM12878 ENCFF565AWY 201 bp overlap
ChIP GM12878 ENCSR000BMI.SRF.GM12878 97 bp overlap
STAT3 1 dataset
ChIP Th1_IL-6_Mut3 GSE130810.STAT3.Th1_IL-6_Mut3 187 bp overlap
TBX21 4 datasets
ChIP CD4_Th1 GSE62482.TBX21.CD4_Th1 208 bp overlap
ChIP GM12878 ENCFF951HUW 368 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 286 bp overlap
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 276 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 183 bp overlap
TRIM24 1 dataset
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 192 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 190 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 119 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 162 bp overlap