chr6 : 105,986,477 – 105,986,790
313 bp 56 TFs 1 linked gene
This 313 bp open chromatin element is linked to PRDM1 and is bound by 56 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PRDM1 6.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:105,981,477 – 105,991,790
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
56 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP CD4_Th1_DMSO GSE62482.AFF4.CD4_Th1_DMSO 109 bp overlap
AR 2 datasets
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 223 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 175 bp overlap
ARID2 1 dataset
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 203 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 313 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 313 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 160 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 253 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 313 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 313 bp overlap
BRD4 1 dataset
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 178 bp overlap
CBFB 2 datasets
ChIP WTC11 ENCFF113HIY 86 bp overlap
ChIP WTC11 ENCFF113HIY 292 bp overlap
CHD1 2 datasets
ChIP H1 ENCFF998XEK 262 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 281 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 313 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 293 bp overlap
CTCF 1 dataset
ChIP U-937 ERP008568.CTCF.U-937 145 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 214 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 153 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 313 bp overlap
ERG 1 dataset
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 92 bp overlap
ESR1 3 datasets
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 145 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 137 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 105 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
ETV5::FOXO1 1 dataset
Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap
EZH2 11 datasets
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 192 bp overlap
ChIP GM23338 ENCFF613YON 160 bp overlap
ChIP GM23338 ENCFF886DXX 70 bp overlap
ChIP H1 ENCFF232NZA 313 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 63 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 58 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 183 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 313 bp overlap
ChIP hESC GSE113817.EZH2.hESC 203 bp overlap
ChIP hepatocyte ENCFF552DZB 91 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 263 bp overlap
EZH2_phosphoT487 3 datasets
ChIP GM23338 ENCSR591DTH.EZH2_phosphoT487.GM23338 183 bp overlap
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 220 bp overlap
ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 266 bp overlap
FOXA1 1 dataset
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 112 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 289 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 122 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JARID2 7 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 162 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 300 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 270 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 311 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 304 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 313 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 313 bp overlap
JUN 2 datasets
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 206 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 77 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 224 bp overlap
KDM4A 3 datasets
ChIP H1 ENCFF078LED 95 bp overlap
ChIP H1 ENCFF078LED 301 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 224 bp overlap
LMO2 1 dataset
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 127 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 313 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 313 bp overlap
OLIG2 1 dataset
ChIP brain-prefrontal-cortex_2018006 GSE129039.OLIG2.brain-prefrontal-cortex_2018006 62 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 313 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 313 bp overlap
PHF8 1 dataset
ChIP WA01 ENCSR000ATK.PHF8.WA01 88 bp overlap
POLR2A 1 dataset
ChIP spleen ENCFF706IUS 63 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 100 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 313 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 179 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 164 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 211 bp overlap
REST 1 dataset
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 313 bp overlap
ChIP H1 ENCFF239FFS 313 bp overlap
RUNX1 1 dataset
ChIP AML_age-50-70 GSE111821.RUNX1.AML_age-50-70 209 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 313 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 101 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 193 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 165 bp overlap
SMARCA4 1 dataset
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 135 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 313 bp overlap
SS18 1 dataset
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 313 bp overlap
SUZ12 9 datasets
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 251 bp overlap
ChIP H1 ENCFF881NFR 313 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 313 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 162 bp overlap
ChIP NT2/D1 ENCFF574SXS 108 bp overlap
ChIP NT2/D1 ENCFF574SXS 313 bp overlap
ChIP NT2/D1 ENCFF574SXS 313 bp overlap
ChIP ProEs GSE59087.SUZ12.ProEs 125 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 286 bp overlap
TBP 1 dataset
ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 171 bp overlap
ZBED4 1 dataset
Motif DE_12h DE_12h-ZBED4_MA2328.1 10 bp overlap
ZBTB48 1 dataset
ChIP U2OS GSE96776.ZBTB48.U2OS 143 bp overlap
ZNF418 1 dataset
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
ZNF680 1 dataset
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
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