chr6 : 1,057,563 1,058,175
612 bp 86 TFs 0 linked genes
This 612 bp open chromatin element has no linked target genes and is bound by 86 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:1,052,563 – 1,063,175
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 126 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 164 bp overlap
BRD4 3 datasets
ChIP HT29 GSE73319.BRD4.HT29 510 bp overlap
ChIP SW480 GSE73319.BRD4.SW480 586 bp overlap
ChIP hESC GSE33281.BRD4.hESC 70 bp overlap
CDX1 2 datasets
Motif DE_48h DE_48h-CDX1_MA0878.3 10 bp overlap
Motif DE_60h DE_60h-CDX1_MA0878.3 10 bp overlap
CDX2 1 dataset
ChIP Caco-2_PROLIF GSE23436.CDX2.Caco-2_PROLIF 199 bp overlap
CDX4 2 datasets
Motif DE_48h DE_48h-CDX4_MA1473.2 9 bp overlap
Motif DE_60h DE_60h-CDX4_MA1473.2 9 bp overlap
CTCF 1 dataset
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 154 bp overlap
DUX4 2 datasets
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 266 bp overlap
ESR1 1 dataset
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 94 bp overlap
ETV1 2 datasets
Motif DE_48h DE_48h-ETV1_MA0761.3 9 bp overlap
Motif DE_60h DE_60h-ETV1_MA0761.3 9 bp overlap
EZH2 1 dataset
ChIP A-1847 GSE95643.EZH2.A-1847 229 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 301 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 326 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 262 bp overlap
FIGLA 1 dataset
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 321 bp overlap
ChIP DE DE-FOXA2-2 487 bp overlap
FOXM1 1 dataset
ChIP HEK293 GSE60032.FOXM1.HEK293 265 bp overlap
GATA1::TAL1 2 datasets
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_60h DE_60h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 5 datasets
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 260 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 260 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 249 bp overlap
GATA3 1 dataset
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 151 bp overlap
GATA4 8 datasets
ChIP DE DE-GATA4-1 469 bp overlap
ChIP DE DE-GATA4-2 609 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 559 bp overlap
ChIP foregut GSE117136.GATA4.foregut 389 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 435 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 212 bp overlap
GATA5 2 datasets
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 19 datasets
ChIP AGS GSE51705.GATA6.AGS 324 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 301 bp overlap
ChIP DE DE-GATA6-1 604 bp overlap
ChIP DE DE-GATA6-2 612 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 457 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 612 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 570 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 612 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 612 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 612 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 247 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 211 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 300 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 612 bp overlap
ChIP foregut GSE117136.GATA6.foregut 335 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 313 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 285 bp overlap
GRHL2 1 dataset
Motif DE_48h DE_48h-GRHL2_MA1105.3 8 bp overlap
GSPT2 1 dataset
ChIP HEK293T GSE35197.GSPT2.HEK293T 235 bp overlap
Gata3 2 datasets
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HOXA10 2 datasets
Motif DE_48h DE_48h-HOXA10_MA0899.2 9 bp overlap
Motif DE_60h DE_60h-HOXA10_MA0899.2 9 bp overlap
HOXB13 2 datasets
Motif DE_48h DE_48h-HOXB13_MA0901.3 9 bp overlap
Motif DE_60h DE_60h-HOXB13_MA0901.3 9 bp overlap
HOXD9 2 datasets
Motif DE_48h DE_48h-HOXD9_MA0913.3 9 bp overlap
Motif DE_60h DE_60h-HOXD9_MA0913.3 9 bp overlap
IKZF2 2 datasets
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 2 datasets
Motif DE_48h DE_48h-Ikzf3_MA1992.2 9 bp overlap
Motif DE_60h DE_60h-Ikzf3_MA1992.2 9 bp overlap
KLF1 3 datasets
ChIP HEK293 ENCFF159QSW 437 bp overlap
ChIP HEK293 ENCFF159QSW 345 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 519 bp overlap
KLF3 1 dataset
ChIP HEK293 GSE69739.KLF3.HEK293 442 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 64 bp overlap
KLF7 2 datasets
ChIP HEK293 ENCSR604VWJ.KLF7.HEK293 222 bp overlap
ChIP HEK293 ENCSR604VWJ.KLF7.HEK293 263 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 123 bp overlap
Mecom 2 datasets
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
NEUROD1 2 datasets
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 194 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 606 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 98 bp overlap
OSR2 1 dataset
ChIP HEK293 GSE76494.OSR2.HEK293 188 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 572 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 172 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 200 bp overlap
RBM39 1 dataset
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 186 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 393 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 288 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 425 bp overlap
SIX2 1 dataset
Motif DE_48h DE_48h-SIX2_MA1119.2 11 bp overlap
SMAD2 2 datasets
Motif DE_48h DE_48h-SMAD2_MA1964.2 6 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 169 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 612 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 612 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 371 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 371 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 612 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 559 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 490 bp overlap
SMAD3 2 datasets
Motif DE_48h DE_48h-SMAD3_MA0795.1 10 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 156 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 197 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 198 bp overlap
SMAD5 1 dataset
Motif DE_48h DE_48h-SMAD5_MA1557.1 10 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 485 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 451 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 192 bp overlap
STAT1 3 datasets
ChIP CD14 GSE43036.STAT1.CD14 186 bp overlap
Motif DE_48h DE_48h-STAT1_MA0137.4 9 bp overlap
Motif DE_60h DE_60h-STAT1_MA0137.4 9 bp overlap
Smad4 1 dataset
Motif DE_48h DE_48h-Smad4_MA1153.2 7 bp overlap
Stat5a 2 datasets
Motif DE_48h DE_48h-Stat5a_MA1624.2 9 bp overlap
Motif DE_60h DE_60h-Stat5a_MA1624.2 9 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 189 bp overlap
TRIM24 2 datasets
ChIP HepG2 ENCFF513IRS 357 bp overlap
ChIP HepG2 ENCFF513IRS 371 bp overlap
TRPS1 2 datasets
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 352 bp overlap
ZBTB12 1 dataset
Motif DE_48h DE_48h-ZBTB12_MA1649.2 7 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 219 bp overlap
ZEB1 1 dataset
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 543 bp overlap
ZIM3 2 datasets
Motif DE_48h DE_48h-ZIM3_MA1709.2 11 bp overlap
Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap
ZNF121 1 dataset
ChIP HEK293 GSE76494.ZNF121.HEK293 134 bp overlap
ZNF135 2 datasets
Motif DE_48h DE_48h-ZNF135_MA1587.1 14 bp overlap
Motif DE_60h DE_60h-ZNF135_MA1587.1 14 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 473 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 162 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 267 bp overlap
ZNF677 2 datasets
Motif DE_48h DE_48h-ZNF677_MA2101.1 12 bp overlap
Motif DE_60h DE_60h-ZNF677_MA2101.1 12 bp overlap
ZNF680 2 datasets
Motif DE_48h DE_48h-ZNF680_MA1729.2 11 bp overlap
Motif DE_60h DE_60h-ZNF680_MA1729.2 11 bp overlap
ZNF766 1 dataset
ChIP HEK293T GSE78099.ZNF766.HEK293T 149 bp overlap
ZNF843 3 datasets
ChIP HEK293 ENCFF241QRH 428 bp overlap
ChIP HEK293 ENCFF241QRH 201 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 541 bp overlap
ZNF85 1 dataset
Motif DE_48h DE_48h-ZNF85_MA1720.2 12 bp overlap
ZXDB 2 datasets
ChIP HEK293 ENCFF835SGA 216 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 366 bp overlap
Zic1::Zic2 3 datasets
Motif DE_48h DE_48h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_48h DE_48h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_60h DE_60h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 1 dataset
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap
Zic3 3 datasets
Motif DE_48h DE_48h-Zic3_MA0697.3 7 bp overlap
Motif DE_48h DE_48h-Zic3_MA0697.3 7 bp overlap
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap