chr5 : 178,470,038 178,470,701
663 bp 49 TFs 5 linked genes
This 663 bp open chromatin element is linked to 5 target genes and is bound by 49 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
COL23A1 107.0 kb Distal Multiome
CLK4 156.5 kb Distal Multiome
PHYKPL 238.0 kb Distal Multiome
ZNF354A 260.1 kb Distal Multiome
HNRNPAB 266.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:178,465,038 – 178,475,701
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
49 transcription factors
Source
Cell type
ASCL1 2 datasets
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 191 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 109 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 155 bp overlap
BRD4 1 dataset
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 296 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 274 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 193 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 133 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 296 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 173 bp overlap
ESR1 1 dataset
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 229 bp overlap
EZH2 1 dataset
ChIP PC-9 ENCSR793USK.EZH2.PC-9 198 bp overlap
GATA2 7 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 120 bp overlap
ChIP K562 ENCFF088XQT 77 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 167 bp overlap
ChIP SK-N-SH ENCFF764OZD 98 bp overlap
ChIP SK-N-SH ENCFF764OZD 320 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 176 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 68 bp overlap
GATA3 3 datasets
ChIP Kelly GSE65664.GATA3.Kelly 127 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 60 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 74 bp overlap
GATA6 2 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 163 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 235 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 292 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 239 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 314 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 166 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 63 bp overlap
KAT7 2 datasets
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 352 bp overlap
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 119 bp overlap
KDM1A 2 datasets
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 118 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 207 bp overlap
L3MBTL2 2 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 133 bp overlap
ChIP K562 ENCFF320EQC 282 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 349 bp overlap
MGA 1 dataset
ChIP K562 ENCFF140CEX 366 bp overlap
MNT 2 datasets
ChIP Hep-G2 ENCSR261EDU.MNT.Hep-G2 230 bp overlap
ChIP HepG2 ENCFF701PYP 131 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 477 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 205 bp overlap
NEUROD1 8 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 231 bp overlap
ChIP D283-Med GSE92582.NEUROD1.D283-Med 325 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 311 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 150 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 200 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 324 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 272 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 255 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 91 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 145 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 130 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 62 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 128 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 300 bp overlap
PKNOX1 2 datasets
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 120 bp overlap
ChIP K562 ENCFF236IUS 175 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 134 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 253 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 259 bp overlap
RELA 3 datasets
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 205 bp overlap
ChIP HUVEC-C_TNF-60min GSE121890.RELA.HUVEC-C_TNF-60min 61 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 147 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 663 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 663 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 443 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 414 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 169 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 440 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 429 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 663 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 663 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 212 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 248 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 245 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 343 bp overlap
SS18 2 datasets
ChIP SYO-1 GSE108025.SS18.SYO-1 346 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 110 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 227 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 122 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 233 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 253 bp overlap
TP53 1 dataset
ChIP IMR-90_SENES_SHLUC GSE42728.TP53.IMR-90_SENES_SHLUC 60 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 268 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 258 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 311 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 311 bp overlap