chr5 : 152,689,042 – 152,689,680
638 bp 51 TFs 1 linked gene
This 638 bp open chromatin element is linked to LINC01470 and is bound by 51 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01470 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:152,684,042 – 152,694,680
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
51 transcription factors
Source
Cell type
AR 1 dataset
ChIP epididymis_HEE_R1881 GSE109061.AR.epididymis_HEE_R1881 133 bp overlap
ARID1A 2 datasets
ChIP RMG-I GSE120058.ARID1A.RMG-I 211 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 160 bp overlap
ARNTL 2 datasets
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 299 bp overlap
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 183 bp overlap
BRD2 1 dataset
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 152 bp overlap
BRD4 7 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 211 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 256 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 134 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 141 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 144 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 79 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 67 bp overlap
CEBPB 1 dataset
ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 110 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 126 bp overlap
CREBBP 1 dataset
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 141 bp overlap
CTCF 1 dataset
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 123 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 225 bp overlap
ChIP BLaER1 ENCFF460KDD 323 bp overlap
EP300 4 datasets
ChIP Ishikawa ENCFF364ZWT 309 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 288 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 296 bp overlap
ChIP neural cell ENCFF442QNK 119 bp overlap
ESR1 3 datasets
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 122 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 221 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 230 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 343 bp overlap
FOS 1 dataset
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 265 bp overlap
FOSL1 2 datasets
ChIP BT-549 GSE112961.FOSL1.BT-549 352 bp overlap
ChIP BT-549 GSE46166.FOSL1.BT-549 183 bp overlap
FOXA1 1 dataset
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 95 bp overlap
HIF1A 2 datasets
ChIP U2OS_DMOG GSE85096.HIF1A.U2OS_DMOG 399 bp overlap
ChIP U2OS_trough_DMSO GSE85096.HIF1A.U2OS_trough_DMSO 160 bp overlap
HSF1 1 dataset
ChIP MO91 GSE45852.HSF1.MO91 114 bp overlap
JUN 3 datasets
ChIP BT-549 GSE46166.JUN.BT-549 155 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 97 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 283 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 139 bp overlap
MAX 2 datasets
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 143 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 348 bp overlap
MED26 1 dataset
ChIP U2OS_SHCTR GSE73742.MED26.U2OS_SHCTR 372 bp overlap
MXI1 1 dataset
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 245 bp overlap
NFE2L2 1 dataset
ChIP BEAS-2B_arsenic GSE145834.NFE2L2.BEAS-2B_arsenic 216 bp overlap
NFIC 3 datasets
ChIP Ishikawa ENCFF029AAD 236 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 97 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 223 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 87 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 176 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 245 bp overlap
PKNOX1 1 dataset
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 254 bp overlap
POLR2A 3 datasets
ChIP neural cell ENCFF604SPB 125 bp overlap
ChIP spleen ENCFF044PYR 170 bp overlap
ChIP spleen ENCFF446ZGT 172 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RAD21 4 datasets
ChIP HEC-1-B_RF-insertion GSE140868.RAD21.HEC-1-B_RF-insertion 129 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 216 bp overlap
ChIP neural cell ENCFF564MOT 197 bp overlap
ChIP neural cell ENCFF564MOT 397 bp overlap
REST 2 datasets
ChIP CD4 GSE49570.REST.CD4 159 bp overlap
ChIP neural ENCSR000BTV.REST.neural 220 bp overlap
RUVBL2 2 datasets
ChIP U2OS_DMSO GSE130507.RUVBL2.U2OS_DMSO 230 bp overlap
ChIP U2OS_cordycepin GSE130507.RUVBL2.U2OS_cordycepin 339 bp overlap
SMARCA2 2 datasets
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 86 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 142 bp overlap
SMARCA4 3 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 51 bp overlap
ChIP TOV-21G_resistant GSE110448.SMARCA4.TOV-21G_resistant 266 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 55 bp overlap
SMC3 3 datasets
ChIP neural ENCSR404BPV.SMC3.neural 312 bp overlap
ChIP neural cell ENCFF795YGY 109 bp overlap
ChIP neural cell ENCFF795YGY 310 bp overlap
SP3 1 dataset
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
SP8 1 dataset
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
STAT1 2 datasets
ChIP FaDu_BB608 GSE78212.STAT1.FaDu_BB608 182 bp overlap
ChIP FaDu_DMSO GSE78212.STAT1.FaDu_DMSO 242 bp overlap
STAT3 10 datasets
ChIP FaDu_DMSO GSE78212.STAT3.FaDu_DMSO 165 bp overlap
ChIP MCF-10A ENCSR000DOZ.STAT3.MCF-10A 193 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 155 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.STAT3.MCF10A-Er-Src_EtOH 136 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 156 bp overlap
ChIP T-47D_JC4739 GSE126004.STAT3.T-47D_JC4739 157 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 120 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 238 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 236 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 332 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 327 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 147 bp overlap
TEAD4 1 dataset
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 276 bp overlap
TFEB 1 dataset
Motif DE_12h DE_12h-TFEB_MA0692.2 8 bp overlap
THRA 1 dataset
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
USF1 4 datasets
Motif DE_12h DE_12h-USF1_MA0093.4 10 bp overlap
ChIP H1 ENCFF090WVU 121 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 102 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 151 bp overlap
VDR 1 dataset
ChIP kidney-cortex GSE129585.VDR.kidney-cortex 322 bp overlap
ZFX 1 dataset
ChIP MCF-7 GSE102616.ZFX.MCF-7 271 bp overlap
ZNF605 1 dataset
ChIP HEK293T GSE78099.ZNF605.HEK293T 266 bp overlap
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