chr5 : 140,672,392 140,672,986
594 bp 61 TFs 2 linked genes
This 594 bp open chromatin element is linked to DND1 and WDR55 and is bound by 61 transcription factors.
Linked Genes
2 genes
Distance
Gene Expression Dist. to TSS Distance Link type
DND1 589 bp At TSS Proximity
WDR55 7.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:140,667,392 – 140,677,986
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP MCF-7 GSE144036.AFF4.MCF-7 144 bp overlap
AGO1 5 datasets
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 264 bp overlap
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 264 bp overlap
ChIP HepG2 ENCFF277EOU 445 bp overlap
ChIP K562 ENCFF025NLP 594 bp overlap
ChIP K562 ENCFF741BCI 594 bp overlap
AGO2 2 datasets
ChIP HepG2 ENCFF252VFI 594 bp overlap
ChIP HepG2 ENCFF773YDL 594 bp overlap
ARID2 2 datasets
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 69 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 95 bp overlap
BRD4 1 dataset
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 174 bp overlap
CBFB 2 datasets
ChIP ME-1 GSE46044.CBFB.ME-1 226 bp overlap
ChIP ME-1 GSE46044.CBFB.ME-1 235 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 247 bp overlap
EGR1 2 datasets
ChIP A-375 GSE116190.EGR1.A-375 63 bp overlap
ChIP K-562 ENCSR000BNE.EGR1.K-562 55 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 261 bp overlap
ERG 2 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 552 bp overlap
ChIP K-562 GSE23730.ERG.K-562 267 bp overlap
ESR1 1 dataset
ChIP Ishikawa GSE99905.ESR1.Ishikawa 288 bp overlap
FIP1L1 3 datasets
ChIP K-562 GSE120104.FIP1L1.K-562 545 bp overlap
ChIP K-562 ENCSR177DNR.FIP1L1.K-562 215 bp overlap
ChIP K-562 ENCSR177DNR.FIP1L1.K-562 269 bp overlap
FLI1 1 dataset
ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 300 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 271 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 594 bp overlap
FUS 4 datasets
ChIP K562 ENCFF090LHF 406 bp overlap
ChIP K562 ENCFF090LHF 391 bp overlap
ChIP K562 ENCFF401LGY 407 bp overlap
ChIP K562 ENCFF401LGY 391 bp overlap
GTF2F1 2 datasets
ChIP K-562 ENCSR377BLZ.GTF2F1.K-562 151 bp overlap
ChIP K562 ENCFF501ZHS 148 bp overlap
HEXIM1 2 datasets
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 196 bp overlap
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 123 bp overlap
IFNA1 1 dataset
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 175 bp overlap
JUN 2 datasets
ChIP A549 ENCFF846DUV 246 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 594 bp overlap
KDM4A 2 datasets
ChIP WA01 ENCSR000AVC.KDM4A.WA01 144 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 69 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 95 bp overlap
MAX 1 dataset
ChIP endothelial_umbilical-vein ENCSR000EEZ.MAX.endothelial_umbilical-vein 122 bp overlap
MBD2 1 dataset
ChIP HeLa GSE41006.MBD2.HeLa 117 bp overlap
NCAPH2 4 datasets
ChIP HEK293 GSE97540.NCAPH2.HEK293 569 bp overlap
ChIP IMR-90_Bethyl275_G GSE118494.NCAPH2.IMR-90_Bethyl275_G 131 bp overlap
ChIP IMR-90_Bethyl275_OIS GSE118494.NCAPH2.IMR-90_Bethyl275_OIS 115 bp overlap
ChIP IMR-90_FLAG_G GSE118494.NCAPH2.IMR-90_FLAG_G 104 bp overlap
NR2F2 1 dataset
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 149 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 122 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 277 bp overlap
OGT 1 dataset
ChIP PC-3_OSMI-2 GSE112667.OGT.PC-3_OSMI-2 363 bp overlap
POLR2A 17 datasets
ChIP A549 ENCFF034EBG 54 bp overlap
ChIP GM12878 ENCFF521FXC 387 bp overlap
ChIP GM12892 ENCFF245LYF 169 bp overlap
ChIP GM12892 ENCFF506PGQ 57 bp overlap
ChIP GM19193 ENCFF599VTO 338 bp overlap
ChIP GM23338 ENCFF450WCS 112 bp overlap
ChIP HeLa-S3 ENCFF045HUU 389 bp overlap
ChIP K562 ENCFF215CWW 352 bp overlap
ChIP K562 ENCFF262YXJ 525 bp overlap
ChIP MCF-7 ENCFF164XWP 242 bp overlap
ChIP Panc1 ENCFF290KAB 65 bp overlap
ChIP SK-N-SH ENCFF683PFH 188 bp overlap
ChIP esophagus muscularis mucosa ENCFF432ZCY 295 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 155 bp overlap
ChIP spleen ENCFF044PYR 114 bp overlap
ChIP spleen ENCFF446ZGT 509 bp overlap
ChIP spleen ENCFF706IUS 594 bp overlap
POLR2G 4 datasets
ChIP HepG2 ENCFF241AEG 165 bp overlap
ChIP HepG2 ENCFF508UTS 227 bp overlap
ChIP K562 ENCFF047BLG 594 bp overlap
ChIP K562 ENCFF648YPL 594 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 144 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 594 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 121 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 573 bp overlap
PRPF4 3 datasets
ChIP K562 ENCFF046WLD 532 bp overlap
ChIP K562 ENCFF046WLD 407 bp overlap
ChIP K562 ENCFF202AJJ 530 bp overlap
RBFOX2 4 datasets
ChIP HepG2 ENCFF554DMZ 594 bp overlap
ChIP HepG2 ENCFF939HTZ 578 bp overlap
ChIP K562 ENCFF196WTG 594 bp overlap
ChIP K562 ENCFF967GRF 594 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 56 bp overlap
REST 1 dataset
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 100 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 515 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 594 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 86 bp overlap
SIRT6 1 dataset
ChIP K-562 ENCSR000AUB.SIRT6.K-562 206 bp overlap
SMAD2-3 1 dataset
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 197 bp overlap
SMAD3 1 dataset
ChIP SUM159PT GSE130364.SMAD3.SUM159PT 57 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 431 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 231 bp overlap
ChIP HCC70 GSE126380.SREBP2.HCC70 273 bp overlap
SRSF4 1 dataset
ChIP K-562 GSE120104.SRSF4.K-562 265 bp overlap
STAT3 2 datasets
ChIP WA01 ERP004237.STAT3.WA01 182 bp overlap
ChIP WA01 ERP004237.STAT3.WA01 227 bp overlap
SUPT5H 7 datasets
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 228 bp overlap
ChIP HCT-116_Nut3 GSE138548.SUPT5H.HCT-116_Nut3 58 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 125 bp overlap
ChIP HeLa GSE125534.SUPT5H.HeLa 79 bp overlap
ChIP K562 ENCFF902PAW 140 bp overlap
ChIP MOLT-4_SNS GSE89384.SUPT5H.MOLT-4_SNS 76 bp overlap
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 133 bp overlap
SUPT6H 2 datasets
ChIP HCT-116 GSE130509.SUPT6H.HCT-116 231 bp overlap
ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 58 bp overlap
TAF15 6 datasets
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 168 bp overlap
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 168 bp overlap
ChIP HepG2 ENCFF116QSW 376 bp overlap
ChIP HepG2 ENCFF116QSW 81 bp overlap
ChIP HepG2 ENCFF406BOT 397 bp overlap
ChIP K-562 ENCSR047LSJ.TAF15.K-562 103 bp overlap
TAL1 1 dataset
ChIP ME-1 GSE46044.TAL1.ME-1 319 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 579 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 212 bp overlap
TRIM24 1 dataset
ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 302 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 566 bp overlap
ZBTB33 3 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 263 bp overlap
ChIP K562 ENCFF427SDV 383 bp overlap
ChIP K562 ENCFF875HLX 300 bp overlap
ZNF629 2 datasets
ChIP Hep-G2 ENCSR363ASY.ZNF629.Hep-G2 96 bp overlap
ChIP HepG2 ENCFF490FFQ 184 bp overlap