chr5 : 109,650,263 – 109,650,903

640 bp 86 TFs 0 linked genes

This 640 bp open chromatin element has no linked target genes and is bound by 86 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

86 transcription factors

ARNTL 1 dataset

ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 209 bp overlap

ASCL1 1 dataset

Motif DE_60h DE_60h-ASCL1_MA1631.2 9 bp overlap

Ar 1 dataset

Motif DE_60h DE_60h-Ar_MA0007.4 16 bp overlap

BCL11A 1 dataset

ChIP CD34_Day3_30min GSE104676.BCL11A.CD34_Day3_30min 56 bp overlap

BRD2 1 dataset

ChIP K-562_iBET-BD1-IFNG GSE138084.BRD2.K-562_iBET-BD1-IFNG 201 bp overlap

BRD3 1 dataset

ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 286 bp overlap

BRD4 4 datasets

ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 286 bp overlap

ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 178 bp overlap

ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 186 bp overlap

ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 217 bp overlap

CBFA2T2 1 dataset

ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 253 bp overlap

CBFA2T3 2 datasets

ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 389 bp overlap

ChIP K562 ENCFF673OEZ 229 bp overlap

CDX2 1 dataset

ChIP Caco-2_PROLIF GSE23436.CDX2.Caco-2_PROLIF 148 bp overlap

CTCF 1 dataset

ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 221 bp overlap

ERG 1 dataset

ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 322 bp overlap

ESR1 1 dataset

ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 237 bp overlap

Elf5 1 dataset

Motif DE_60h DE_60h-Elf5_MA0136.4 8 bp overlap

FIGLA 1 dataset

Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 524 bp overlap

ChIP DE DE-FOXA2-2 442 bp overlap

GATA1 6 datasets

ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 118 bp overlap

ChIP K-562 GSE107726.GATA1.K-562 279 bp overlap

ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 306 bp overlap

ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 319 bp overlap

ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 195 bp overlap

ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 311 bp overlap

GATA1::TAL1 1 dataset

Motif DE_60h DE_60h-GATA1TAL1_MA0140.3 17 bp overlap

GATA2 4 datasets

ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 234 bp overlap

ChIP CD34_DMSO GSE60792.GATA2.CD34_DMSO 150 bp overlap

ChIP SKH1 GSE87283.GATA2.SKH1 327 bp overlap

ChIP TF1 GSE73207.GATA2.TF1 343 bp overlap

GATA4 6 datasets

ChIP DE DE-GATA4-1 447 bp overlap

ChIP DE DE-GATA4-2 479 bp overlap

Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap

ChIP foregut GSE117136.GATA4.foregut 549 bp overlap

ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 553 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 354 bp overlap

GATA5 1 dataset

Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap

GATA6 14 datasets

ChIP DE DE-GATA6-1 374 bp overlap

ChIP DE DE-GATA6-2 413 bp overlap

Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 359 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 476 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 384 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 275 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 493 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 443 bp overlap

ChIP foregut GSE117136.GATA6.foregut 616 bp overlap

ChIP foregut_KO GSE117136.GATA6.foregut_KO 411 bp overlap

ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 491 bp overlap

ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 493 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 254 bp overlap

Gata3 1 dataset

Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap

HNF1B 1 dataset

ChIP foregut GSE117136.HNF1B.foregut 315 bp overlap

HNRNPLL 1 dataset

ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 184 bp overlap

HOXB4 1 dataset

Motif DE_60h DE_60h-HOXB4_MA1499.2 6 bp overlap

HOXC4 1 dataset

Motif DE_60h DE_60h-HOXC4_MA1504.2 6 bp overlap

HOXD12::ELK1 1 dataset

Motif DE_60h DE_60h-HOXD12ELK1_MA1958.2 13 bp overlap

HOXD4 1 dataset

Motif DE_60h DE_60h-HOXD4_MA1507.2 6 bp overlap

IKZF2 1 dataset

Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap

KDM1A 2 datasets

ChIP K-562 GSE117944.KDM1A.K-562 231 bp overlap

ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 189 bp overlap

KDM4C 1 dataset

ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 173 bp overlap

LDB1 1 dataset

ChIP K-562 GSE142227.LDB1.K-562 455 bp overlap

LMO2 1 dataset

ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 378 bp overlap

MEIS1 1 dataset

Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap

MEIS2 1 dataset

ChIP K-562 ENCSR851BNE.MEIS2.K-562 208 bp overlap

MGA::EVX1 1 dataset

Motif DE_60h DE_60h-MGAEVX1_MA1960.2 11 bp overlap

MTA3 1 dataset

ChIP K-562 ENCSR180NCY.MTA3.K-562 251 bp overlap

MYB 3 datasets

Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap

ChIP DU528 GSE94000.MYB.DU528 373 bp overlap

ChIP Loucy GSE94000.MYB.Loucy 331 bp overlap

MYCN 1 dataset

ChIP RH4 GSE83726.MYCN.RH4 282 bp overlap

MYOD1 1 dataset

ChIP RH4 GSE83726.MYOD1.RH4 231 bp overlap

NKX6-3 1 dataset

Motif DE_60h DE_60h-NKX6-3_MA1530.2 8 bp overlap

NR3C1 1 dataset

Motif DE_60h DE_60h-NR3C1_MA0113.4 15 bp overlap

NR3C2 1 dataset

Motif DE_60h DE_60h-NR3C2_MA0727.2 15 bp overlap

NR5A1 1 dataset

Motif DE_60h DE_60h-NR5A1_MA1540.3 12 bp overlap

NR6A1 1 dataset

Motif DE_60h DE_60h-NR6A1_MA1541.2 14 bp overlap

Nr5A2 1 dataset

Motif DE_60h DE_60h-Nr5A2_MA0505.3 9 bp overlap

PBX1 1 dataset

Motif DE_60h DE_60h-PBX1_MA0070.2 9 bp overlap

PDX1 1 dataset

ChIP hiPSC GSE125768.PDX1.hiPSC 415 bp overlap

PHOX2A 1 dataset

Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap

POU2F2 1 dataset

ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 119 bp overlap

POU4F2 1 dataset

ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 180 bp overlap

POU6F1 1 dataset

Motif DE_60h DE_60h-POU6F1_MA1549.2 7 bp overlap

POU6F2 1 dataset

Motif DE_60h DE_60h-POU6F2_MA0793.2 9 bp overlap

Pgr 1 dataset

Motif DE_60h DE_60h-Pgr_MA2323.1 17 bp overlap

RBBP4 1 dataset

ChIP SCMC GSE155861.RBBP4.SCMC 405 bp overlap

RUNX1 3 datasets

ChIP AML_Blast GSE60130.RUNX1.AML_Blast 343 bp overlap

ChIP CD34 GSE64862.RUNX1.CD34 343 bp overlap

ChIP SKH1 GSE87283.RUNX1.SKH1 242 bp overlap

RUNX2 1 dataset

ChIP PER-117 GSE151819.RUNX2.PER-117 355 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 355 bp overlap

SMARCA4 1 dataset

ChIP A-549_AG15724 GSE132290.SMARCA4.A-549_AG15724 66 bp overlap

SNAI1 1 dataset

Motif DE_60h DE_60h-SNAI1_MA1558.2 7 bp overlap

SNAI2 1 dataset

ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 185 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 315 bp overlap

Six4 1 dataset

Motif DE_60h DE_60h-Six4_MA2001.2 7 bp overlap

TAL1 12 datasets

ChIP CHRF28811 ERP008568.TAL1.CHRF28811 422 bp overlap

ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 155 bp overlap

ChIP K-562 GSE107726.TAL1.K-562 460 bp overlap

ChIP K-562 ENCSR106FRG.TAL1.K-562 227 bp overlap

ChIP K-562 ENCSR000EHB.TAL1.K-562 130 bp overlap

ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 283 bp overlap

ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 214 bp overlap

ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 334 bp overlap

ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 318 bp overlap

ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 147 bp overlap

ChIP ProEs GSE59087.TAL1.ProEs 141 bp overlap

ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 263 bp overlap

TBP 1 dataset

ChIP K-562 GSE55306.TBP.K-562 211 bp overlap

TCF12 1 dataset

Motif DE_60h DE_60h-TCF12_MA1648.2 7 bp overlap

TCF3 3 datasets

Motif DE_60h DE_60h-TCF3_MA0522.4 7 bp overlap

ChIP K-562 ENCSR970OJY.TCF3.K-562 348 bp overlap

ChIP K562 ENCFF319QZT 381 bp overlap

TEAD1 1 dataset

ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 158 bp overlap

TFAP2A 1 dataset

Motif DE_60h DE_60h-TFAP2A_MA0003.5 9 bp overlap

TFAP2B 2 datasets

Motif DE_60h DE_60h-TFAP2B_MA0812.2 9 bp overlap

TFAP2C 1 dataset

Motif DE_60h DE_60h-TFAP2C_MA0814.3 9 bp overlap

TFAP2E 1 dataset

Motif DE_60h DE_60h-TFAP2E_MA1569.2 9 bp overlap

TP53 1 dataset

ChIP SW480_shp53_16h_TNF-a GSE115985.TP53.SW480_shp53_16h_TNF-a 251 bp overlap

TRPS1 1 dataset

Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap

ZEB1 1 dataset

Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap

ZFP42 1 dataset

Motif DE_60h DE_60h-ZFP42_MA1651.2 13 bp overlap

ZNF24 4 datasets

ChIP K-562 ENCSR385AHH.ZNF24.K-562 312 bp overlap

ChIP K-562 ENCSR695EQB.ZNF24.K-562 321 bp overlap

ChIP K-562 ENCSR117WTM.ZNF24.K-562 247 bp overlap

ChIP K562 ENCFF781QQQ 328 bp overlap

ZNF324 1 dataset

Motif DE_60h DE_60h-ZNF324_MA1977.2 14 bp overlap

ZNF416 1 dataset

Motif DE_60h DE_60h-ZNF416_MA1979.2 10 bp overlap

ZNF610 1 dataset

Motif DE_60h DE_60h-ZNF610_MA1713.2 10 bp overlap

ZNF680 1 dataset

Motif DE_60h DE_60h-ZNF680_MA1729.2 11 bp overlap

ZNF750 1 dataset

ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 184 bp overlap

ZNF770 1 dataset

Motif DE_60h DE_60h-ZNF770_MA2099.1 8 bp overlap

ZSCAN5C 1 dataset

ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 216 bp overlap

Zfp335 1 dataset

Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap