chr5 : 98,742,386 – 98,744,121
1,735 bp 77 TFs 3 linked genes
This 1.7 kb open chromatin element is linked to RGMB, CHD1, and CHD1-DT and is bound by 77 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RGMB 25.6 kb Distal Multiome
CHD1 185.4 kb Distal Multiome
CHD1-DT 185.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:98,737,386 – 98,749,121
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
77 transcription factors
Source
Cell type
AR 2 datasets
ChIP VCaP_DHT GSE79128.AR.VCaP_DHT 223 bp overlap
ChIP VCaP_SH1_R1881 GSE79128.AR.VCaP_SH1_R1881 230 bp overlap
BARX2 2 datasets
Motif DE_36h DE_36h-BARX2_MA1471.2 9 bp overlap
Motif DE_48h DE_48h-BARX2_MA1471.2 9 bp overlap
BRD4 2 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 217 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 338 bp overlap
Bcl11B 4 datasets
Motif DE_36h DE_36h-Bcl11B_MA1989.2 9 bp overlap
Motif DE_48h DE_48h-Bcl11B_MA1989.2 9 bp overlap
Motif DE_60h DE_60h-Bcl11B_MA1989.2 9 bp overlap
Motif DE_72h DE_72h-Bcl11B_MA1989.2 9 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 223 bp overlap
CTCF 4 datasets
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 533 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 439 bp overlap
Cebpa 5 datasets
ChIP BLaER1 ENCFF031ISE 364 bp overlap
ChIP BLaER1 ENCFF093OYK 305 bp overlap
ChIP BLaER1 ENCFF262VBH 378 bp overlap
ChIP BLaER1 ENCFF364PUR 422 bp overlap
ChIP BLaER1 ENCFF896HSY 404 bp overlap
DUX4 4 datasets
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap
Ddit3::Cebpa 4 datasets
Motif DE_36h DE_36h-Ddit3Cebpa_MA0019.2 10 bp overlap
Motif DE_48h DE_48h-Ddit3Cebpa_MA0019.2 10 bp overlap
Motif DE_60h DE_60h-Ddit3Cebpa_MA0019.2 10 bp overlap
Motif DE_72h DE_72h-Ddit3Cebpa_MA0019.2 10 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 602 bp overlap
ELK1::SREBF2 2 datasets
Motif DE_36h DE_36h-ELK1SREBF2_MA1933.2 15 bp overlap
Motif DE_60h DE_60h-ELK1SREBF2_MA1933.2 15 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 194 bp overlap
ERF::SREBF2 2 datasets
Motif DE_36h DE_36h-ERFSREBF2_MA1939.2 16 bp overlap
Motif DE_60h DE_60h-ERFSREBF2_MA1939.2 16 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 835 bp overlap
ChIP DE DE-FOXA2-2 630 bp overlap
FOXO1 1 dataset
ChIP primary-chondrocyte GSE144026.FOXO1.primary-chondrocyte 56 bp overlap
GATA1 1 dataset
Motif DE_72h DE_72h-GATA1_MA0035.5 7 bp overlap
GATA1::TAL1 4 datasets
Motif DE_36h DE_36h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_60h DE_60h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 781 bp overlap
ChIP DE DE-GATA4-2 819 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 713 bp overlap
ChIP DE DE-GATA6-2 273 bp overlap
ChIP DE DE-GATA6-2 788 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 317 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 311 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 278 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 298 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 739 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 533 bp overlap
GRHL2 1 dataset
ChIP LNCaP GSE80256.GRHL2.LNCaP 188 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 252 bp overlap
HMBOX1 3 datasets
Motif DE_36h DE_36h-HMBOX1_MA0895.2 7 bp overlap
Motif DE_48h DE_48h-HMBOX1_MA0895.2 7 bp overlap
Motif DE_60h DE_60h-HMBOX1_MA0895.2 7 bp overlap
HSF4 3 datasets
Motif DE_36h DE_36h-HSF4_MA0771.1 13 bp overlap
Motif DE_48h DE_48h-HSF4_MA0771.1 13 bp overlap
Motif DE_60h DE_60h-HSF4_MA0771.1 13 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 600 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 211 bp overlap
IRF6 4 datasets
Motif DE_36h DE_36h-IRF6_MA1509.1 9 bp overlap
Motif DE_48h DE_48h-IRF6_MA1509.1 9 bp overlap
Motif DE_60h DE_60h-IRF6_MA1509.1 9 bp overlap
Motif DE_72h DE_72h-IRF6_MA1509.1 9 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 463 bp overlap
MSC 3 datasets
Motif DE_36h DE_36h-MSC_MA0665.1 10 bp overlap
Motif DE_48h DE_48h-MSC_MA0665.1 10 bp overlap
Motif DE_60h DE_60h-MSC_MA0665.1 10 bp overlap
MTA2 2 datasets
ChIP RH4 GSE155861.MTA2.RH4 183 bp overlap
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 275 bp overlap
MYF6 3 datasets
Motif DE_36h DE_36h-MYF6_MA0667.1 10 bp overlap
Motif DE_48h DE_48h-MYF6_MA0667.1 10 bp overlap
Motif DE_60h DE_60h-MYF6_MA0667.1 10 bp overlap
MYOD1 5 datasets
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 302 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 256 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 246 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 155 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 280 bp overlap
Mecom 5 datasets
Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
NANOG 3 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 183 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 139 bp overlap
NR1H4::RXRA 1 dataset
Motif DE_60h DE_60h-NR1H4RXRA_MA1146.2 13 bp overlap
NR2C1 3 datasets
Motif DE_36h DE_36h-NR2C1_MA1535.2 6 bp overlap
Motif DE_48h DE_48h-NR2C1_MA1535.2 6 bp overlap
Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap
NR2C2 3 datasets
Motif DE_36h DE_36h-NR2C2_MA1536.2 6 bp overlap
Motif DE_48h DE_48h-NR2C2_MA1536.2 6 bp overlap
Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap
NRL 4 datasets
Motif DE_36h DE_36h-NRL_MA0842.3 12 bp overlap
Motif DE_48h DE_48h-NRL_MA0842.3 12 bp overlap
Motif DE_60h DE_60h-NRL_MA0842.3 12 bp overlap
Motif DE_72h DE_72h-NRL_MA0842.3 12 bp overlap
Nanog 4 datasets
Motif DE_36h DE_36h-Nanog_MA2339.1 7 bp overlap
Motif DE_48h DE_48h-Nanog_MA2339.1 7 bp overlap
Motif DE_60h DE_60h-Nanog_MA2339.1 7 bp overlap
Motif DE_72h DE_72h-Nanog_MA2339.1 7 bp overlap
Nr1H2 3 datasets
Motif DE_36h DE_36h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_48h DE_48h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 3 datasets
Motif DE_36h DE_36h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_48h DE_48h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 3 datasets
Motif DE_36h DE_36h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_48h DE_48h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap
ONECUT1 2 datasets
ChIP liver ERP002306.ONECUT1.liver 106 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 376 bp overlap
PAX3 3 datasets
Motif DE_36h DE_36h-PAX3_MA0780.1 10 bp overlap
Motif DE_48h DE_48h-PAX3_MA0780.1 10 bp overlap
Motif DE_60h DE_60h-PAX3_MA0780.1 10 bp overlap
PAX5 1 dataset
ChIP NALM-6 GSE126300.PAX5.NALM-6 185 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 708 bp overlap
PHOX2A 3 datasets
Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_48h DE_48h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
POU1F1 3 datasets
Motif DE_36h DE_36h-POU1F1_MA0784.3 14 bp overlap
Motif DE_48h DE_48h-POU1F1_MA0784.3 14 bp overlap
Motif DE_60h DE_60h-POU1F1_MA0784.3 14 bp overlap
POU3F3 3 datasets
Motif DE_36h DE_36h-POU3F3_MA0788.1 13 bp overlap
Motif DE_48h DE_48h-POU3F3_MA0788.1 13 bp overlap
Motif DE_60h DE_60h-POU3F3_MA0788.1 13 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 283 bp overlap
Pax7 3 datasets
Motif DE_36h DE_36h-Pax7_MA0680.3 10 bp overlap
Motif DE_48h DE_48h-Pax7_MA0680.3 10 bp overlap
Motif DE_60h DE_60h-Pax7_MA0680.3 10 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 240 bp overlap
RARA 2 datasets
Motif DE_48h DE_48h-RARA_MA0730.1 17 bp overlap
Motif DE_60h DE_60h-RARA_MA0730.1 17 bp overlap
RARA::RXRA 2 datasets
Motif DE_48h DE_48h-RARARXRA_MA0159.1 17 bp overlap
Motif DE_60h DE_60h-RARARXRA_MA0159.1 17 bp overlap
RARA::RXRG 2 datasets
Motif DE_48h DE_48h-RARARXRG_MA1149.2 17 bp overlap
Motif DE_60h DE_60h-RARARXRG_MA1149.2 17 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 179 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 350 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 156 bp overlap
RUNX1 3 datasets
ChIP 697 GSE138031.RUNX1.697 232 bp overlap
ChIP 697 GSE138031.RUNX1.697 149 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 328 bp overlap
Rarb 2 datasets
Motif DE_48h DE_48h-Rarb_MA0858.1 17 bp overlap
Motif DE_60h DE_60h-Rarb_MA0858.1 17 bp overlap
Rhox11 3 datasets
Motif DE_36h DE_36h-Rhox11_MA0629.2 9 bp overlap
Motif DE_48h DE_48h-Rhox11_MA0629.2 9 bp overlap
Motif DE_60h DE_60h-Rhox11_MA0629.2 9 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 692 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 446 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 352 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 509 bp overlap
SNAI2 2 datasets
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 165 bp overlap
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 147 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 126 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 337 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 468 bp overlap
SOX21 4 datasets
Motif DE_36h DE_36h-SOX21_MA0866.1 15 bp overlap
Motif DE_48h DE_48h-SOX21_MA0866.1 15 bp overlap
Motif DE_60h DE_60h-SOX21_MA0866.1 15 bp overlap
Motif DE_72h DE_72h-SOX21_MA0866.1 15 bp overlap
SREBF1 3 datasets
Motif DE_36h DE_36h-SREBF1_MA0829.3 10 bp overlap
Motif DE_48h DE_48h-SREBF1_MA0829.3 10 bp overlap
Motif DE_60h DE_60h-SREBF1_MA0829.3 10 bp overlap
SREBF2 3 datasets
Motif DE_36h DE_36h-SREBF2_MA0596.1 10 bp overlap
Motif DE_48h DE_48h-SREBF2_MA0596.1 10 bp overlap
Motif DE_60h DE_60h-SREBF2_MA0596.1 10 bp overlap
STAT1::STAT2 4 datasets
Motif DE_36h DE_36h-STAT1STAT2_MA0517.2 13 bp overlap
Motif DE_48h DE_48h-STAT1STAT2_MA0517.2 13 bp overlap
Motif DE_60h DE_60h-STAT1STAT2_MA0517.2 13 bp overlap
Motif DE_72h DE_72h-STAT1STAT2_MA0517.2 13 bp overlap
Sox6 4 datasets
Motif DE_36h DE_36h-Sox6_MA0515.1 10 bp overlap
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 704 bp overlap
TEAD4 2 datasets
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 298 bp overlap
THRB 4 datasets
Motif DE_36h DE_36h-THRB_MA1575.2 17 bp overlap
Motif DE_48h DE_48h-THRB_MA1575.2 17 bp overlap
Motif DE_60h DE_60h-THRB_MA1575.2 17 bp overlap
Motif DE_72h DE_72h-THRB_MA1575.2 17 bp overlap
Tcf21 3 datasets
Motif DE_36h DE_36h-Tcf21_MA0832.2 10 bp overlap
Motif DE_48h DE_48h-Tcf21_MA0832.2 10 bp overlap
Motif DE_60h DE_60h-Tcf21_MA0832.2 10 bp overlap
ZNF257 4 datasets
Motif DE_36h DE_36h-ZNF257_MA1710.2 10 bp overlap
Motif DE_48h DE_48h-ZNF257_MA1710.2 10 bp overlap
Motif DE_60h DE_60h-ZNF257_MA1710.2 10 bp overlap
Motif DE_72h DE_72h-ZNF257_MA1710.2 10 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 570 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 302 bp overlap
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