chr4 : 183,920,182 183,920,914
732 bp 79 TFs 3 linked genes
This 732 bp open chromatin element is linked to STOX2, TRAPPC11, and RWDD4 and is bound by 79 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
STOX2 123.0 kb Distal Multiome
TRAPPC11 261.4 kb Distal Multiome
RWDD4 261.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:183,915,182 – 183,925,914
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
79 transcription factors
Source
Cell type
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 130 bp overlap
BRD4 4 datasets
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 619 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 533 bp overlap
ChIP MV4-11-B_DMSO GSE101821.BRD4.MV4-11-B_DMSO 326 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 335 bp overlap
CDX2 1 dataset
Motif DE_60h DE_60h-CDX2_MA0465.3 8 bp overlap
CDX4 1 dataset
Motif DE_60h DE_60h-CDX4_MA1473.2 9 bp overlap
CEBPA 1 dataset
ChIP MV4-11 GSE88746.CEBPA.MV4-11 307 bp overlap
CEBPB 1 dataset
ChIP MV4-11 GSE88746.CEBPB.MV4-11 267 bp overlap
CRX 2 datasets
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 325 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 363 bp overlap
Cebpa 6 datasets
ChIP BLaER1 ENCFF093OYK 349 bp overlap
ChIP BLaER1 ENCFF262VBH 206 bp overlap
ChIP BLaER1 ENCFF346MCV 251 bp overlap
ChIP BLaER1 ENCFF364PUR 264 bp overlap
ChIP BLaER1 ENCFF460KDD 210 bp overlap
ChIP BLaER1 ENCFF896HSY 257 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 370 bp overlap
ESR1 1 dataset
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 215 bp overlap
Erg 1 dataset
Motif DE_60h DE_60h-Erg_MA0474.4 10 bp overlap
FEZF2 1 dataset
Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap
FLI1 1 dataset
ChIP NB4 GSE23730.FLI1.NB4 157 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 516 bp overlap
ChIP DE DE-FOXA2-2 479 bp overlap
GABPA 1 dataset
Motif DE_60h DE_60h-GABPA_MA0062.4 10 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 536 bp overlap
ChIP DE DE-GATA4-2 647 bp overlap
ChIP foregut GSE117136.GATA4.foregut 326 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 334 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 652 bp overlap
ChIP DE DE-GATA6-2 732 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 321 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 425 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 267 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 608 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 454 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 353 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 477 bp overlap
ChIP foregut GSE117136.GATA6.foregut 329 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 248 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 279 bp overlap
GFI1 1 dataset
ChIP THP-1 GSE90769.GFI1.THP-1 219 bp overlap
Hoxa13 1 dataset
Motif DE_60h DE_60h-Hoxa13_MA0650.4 8 bp overlap
Hoxd13 1 dataset
Motif DE_60h DE_60h-Hoxd13_MA0909.4 7 bp overlap
IKZF1 1 dataset
Motif DE_60h DE_60h-IKZF1_MA1508.2 8 bp overlap
IKZF2 2 datasets
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
JMJD1C 1 dataset
ChIP THP-1 GSE63484.JMJD1C.THP-1 268 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 318 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 714 bp overlap
KDM1A 1 dataset
ChIP SU-DHL-4 GSE119038.KDM1A.SU-DHL-4 209 bp overlap
KMT2B 1 dataset
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 538 bp overlap
MAFF 1 dataset
Motif DE_60h DE_60h-MAFF_MA0495.4 11 bp overlap
MEF2A 1 dataset
Motif DE_60h DE_60h-MEF2A_MA0052.5 10 bp overlap
MEF2B 3 datasets
Motif DE_60h DE_60h-MEF2B_MA0660.1 12 bp overlap
ChIP DLBCL GSE110682.MEF2B.DLBCL 387 bp overlap
ChIP KARPAS422 GSE69558.MEF2B.KARPAS422 416 bp overlap
MEF2D 1 dataset
Motif DE_60h DE_60h-MEF2D_MA0773.1 12 bp overlap
MYB 2 datasets
ChIP THP-1 GSE90769.MYB.THP-1 254 bp overlap
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 354 bp overlap
MZF1 1 dataset
Motif DE_60h DE_60h-MZF1_MA0056.3 8 bp overlap
Mafb 1 dataset
Motif DE_60h DE_60h-Mafb_MA0117.3 11 bp overlap
Mecom 1 dataset
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 304 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 293 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 233 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 363 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 349 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 130 bp overlap
ONECUT3 1 dataset
Motif DE_60h DE_60h-ONECUT3_MA0757.2 12 bp overlap
OTX2 2 datasets
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 264 bp overlap
ChIP retina_pigment GSE60024.OTX2.retina_pigment 288 bp overlap
RAD21 1 dataset
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 199 bp overlap
RBPJ 1 dataset
ChIP NHEK GSE29498.RBPJ.NHEK 110 bp overlap
RCOR1 1 dataset
ChIP AML GSE112074.RCOR1.AML 382 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 534 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 166 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 310 bp overlap
SOX12 1 dataset
Motif DE_60h DE_60h-SOX12_MA1561.2 10 bp overlap
SOX14 1 dataset
Motif DE_60h DE_60h-SOX14_MA1562.2 9 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 312 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 541 bp overlap
SOX18 1 dataset
Motif DE_60h DE_60h-SOX18_MA1563.2 8 bp overlap
SOX8 1 dataset
Motif DE_60h DE_60h-SOX8_MA0868.3 7 bp overlap
SPI1 30 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 443 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 321 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 227 bp overlap
ChIP DC_LPS GSE123347.SPI1.DC_LPS 105 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 422 bp overlap
ChIP GM12878 ENCFF134LCP 85 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 175 bp overlap
ChIP HL-60 ENCFF645GBT 142 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 175 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 154 bp overlap
ChIP KG-1 GSE128834.SPI1.KG-1 280 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 409 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 402 bp overlap
ChIP NB4 GSE128834.SPI1.NB4 434 bp overlap
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 130 bp overlap
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 261 bp overlap
ChIP RS4-11 GSE71616.SPI1.RS4-11 284 bp overlap
ChIP RS4-11_DEX GSE71616.SPI1.RS4-11_DEX 296 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 105 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 143 bp overlap
ChIP THP-1_DIFF GSE25426.SPI1.THP-1_DIFF 139 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 253 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 177 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 140 bp overlap
ChIP primary-B-cell_donorA GSE128834.SPI1.primary-B-cell_donorA 290 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 266 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 84 bp overlap
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 193 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 122 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 181 bp overlap
SPIB 3 datasets
Motif DE_60h DE_60h-SPIB_MA0081.3 13 bp overlap
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 215 bp overlap
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 296 bp overlap
SPIC 1 dataset
Motif DE_60h DE_60h-SPIC_MA0687.2 13 bp overlap
STAT1 1 dataset
Motif DE_60h DE_60h-STAT1_MA0137.4 9 bp overlap
STAT3 6 datasets
Motif DE_60h DE_60h-STAT3_MA0144.3 9 bp overlap
ChIP SU-DHL-2 GSE50723.STAT3.SU-DHL-2 145 bp overlap
ChIP SU-DHL-2 GSE50723.STAT3.SU-DHL-2 236 bp overlap
ChIP TMD8 GSE106844.STAT3.TMD8 419 bp overlap
ChIP TMD8_AZD1480 GSE106844.STAT3.TMD8_AZD1480 191 bp overlap
ChIP TMD8_DMSO GSE123398.STAT3.TMD8_DMSO 371 bp overlap
Sox17 1 dataset
Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap
Sox6 1 dataset
Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap
Spi1 1 dataset
Motif DE_60h DE_60h-Spi1_MA0080.7 13 bp overlap
Stat4 1 dataset
Motif DE_60h DE_60h-Stat4_MA0518.2 10 bp overlap
Stat5a 1 dataset
Motif DE_60h DE_60h-Stat5a_MA1624.2 9 bp overlap
Stat5b 1 dataset
Motif DE_60h DE_60h-Stat5b_MA1625.2 9 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 388 bp overlap
ZNF184 1 dataset
Motif DE_60h DE_60h-ZNF184_MA2120.1 13 bp overlap
ZNF675 1 dataset
Motif DE_60h DE_60h-ZNF675_MA1714.2 19 bp overlap
ZNF680 1 dataset
Motif DE_60h DE_60h-ZNF680_MA1729.2 11 bp overlap
Zic3 1 dataset
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap