chr4 : 176,299,830 176,300,857
1,027 bp 90 TFs 4 linked genes
This 1.0 kb open chromatin element is linked to 4 target genes and is bound by 90 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
SPCS3 19.7 kb Distal Multiome
ASB5 68.9 kb Distal Multiome
WDR17 234.4 kb Distal Multiome
GPM6A 297.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:176,294,830 – 176,305,857
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
90 transcription factors
Source
Cell type
BCL6B 2 datasets
Motif DE_48h DE_48h-BCL6B_MA0731.1 17 bp overlap
Motif DE_60h DE_60h-BCL6B_MA0731.1 17 bp overlap
CDK9 1 dataset
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 238 bp overlap
CDX2 1 dataset
Motif DE_60h DE_60h-CDX2_MA0465.3 8 bp overlap
DDX21 2 datasets
ChIP A-375 GSE128080.DDX21.A-375 180 bp overlap
ChIP A-375_1726plus GSE128080.DDX21.A-375_1726plus 197 bp overlap
DPF1 1 dataset
ChIP K-562 GSE97661.DPF1.K-562 208 bp overlap
E2F8 1 dataset
Motif DE_60h DE_60h-E2F8_MA0865.3 9 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 122 bp overlap
EWSR1-FLI1 2 datasets
Motif DE_48h DE_48h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_60h DE_60h-EWSR1-FLI1_MA0149.1 18 bp overlap
FIGLA 1 dataset
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 430 bp overlap
ChIP DE DE-FOXA2-2 526 bp overlap
FOXD2 1 dataset
Motif DE_60h DE_60h-FOXD2_MA0847.4 11 bp overlap
FOXF2 1 dataset
Motif DE_60h DE_60h-FOXF2_MA0030.2 9 bp overlap
FOXH1 1 dataset
Motif DE_60h DE_60h-FOXH1_MA0479.2 8 bp overlap
FOXK1 1 dataset
Motif DE_60h DE_60h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_60h DE_60h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_60h DE_60h-FOXL1_MA0033.2 7 bp overlap
FOXO4 1 dataset
Motif DE_60h DE_60h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_60h DE_60h-FOXO6_MA0849.1 7 bp overlap
FOXP2 1 dataset
Motif DE_60h DE_60h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_60h DE_60h-FOXP3_MA0850.1 7 bp overlap
Foxf1 1 dataset
Motif DE_60h DE_60h-Foxf1_MA1606.2 7 bp overlap
Foxo1 1 dataset
Motif DE_60h DE_60h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_60h DE_60h-Foxo3_MA0157.4 7 bp overlap
Foxq1 1 dataset
Motif DE_60h DE_60h-Foxq1_MA0040.2 10 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 564 bp overlap
ChIP DE DE-GATA4-2 668 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 448 bp overlap
ChIP DE DE-GATA6-2 584 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 588 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 378 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 573 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 412 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 318 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 419 bp overlap
HCFC1 2 datasets
ChIP K-562 ENCSR000EFN.HCFC1.K-562 151 bp overlap
ChIP K562 ENCFF959WVM 208 bp overlap
JUN 1 dataset
ChIP DE_D1 S40-DE-d1-JUN-exp2 345 bp overlap
KLF1 2 datasets
Motif DE_48h DE_48h-KLF1_MA0493.3 8 bp overlap
Motif DE_60h DE_60h-KLF1_MA0493.3 8 bp overlap
KLF10 2 datasets
Motif DE_48h DE_48h-KLF10_MA1511.2 9 bp overlap
Motif DE_60h DE_60h-KLF10_MA1511.2 9 bp overlap
KLF14 2 datasets
Motif DE_48h DE_48h-KLF14_MA0740.2 9 bp overlap
Motif DE_60h DE_60h-KLF14_MA0740.2 9 bp overlap
KLF16 2 datasets
Motif DE_48h DE_48h-KLF16_MA0741.1 11 bp overlap
Motif DE_60h DE_60h-KLF16_MA0741.1 11 bp overlap
KLF2 2 datasets
Motif DE_48h DE_48h-KLF2_MA1515.2 8 bp overlap
Motif DE_60h DE_60h-KLF2_MA1515.2 8 bp overlap
KLF4 2 datasets
Motif DE_48h DE_48h-KLF4_MA0039.5 8 bp overlap
Motif DE_60h DE_60h-KLF4_MA0039.5 8 bp overlap
KLF5 2 datasets
Motif DE_48h DE_48h-KLF5_MA0599.1 10 bp overlap
Motif DE_60h DE_60h-KLF5_MA0599.1 10 bp overlap
KLF9 2 datasets
Motif DE_48h DE_48h-KLF9_MA1107.3 11 bp overlap
Motif DE_60h DE_60h-KLF9_MA1107.3 11 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 166 bp overlap
MAFK 2 datasets
Motif DE_48h DE_48h-MAFK_MA0496.4 10 bp overlap
Motif DE_60h DE_60h-MAFK_MA0496.4 10 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MXI1 1 dataset
Motif DE_72h DE_72h-MXI1_MA1108.3 6 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 233 bp overlap
NFYA 1 dataset
Motif DE_72h DE_72h-NFYA_MA0060.4 8 bp overlap
NFYC 1 dataset
Motif DE_72h DE_72h-NFYC_MA1644.2 7 bp overlap
NR1I2 1 dataset
Motif DE_48h DE_48h-NR1I2_MA1533.2 15 bp overlap
NR1I3 1 dataset
Motif DE_72h DE_72h-NR1I3_MA1534.2 8 bp overlap
NR2F1 1 dataset
Motif DE_48h DE_48h-NR2F1_MA0017.3 12 bp overlap
Nfat5 2 datasets
Motif DE_48h DE_48h-Nfat5_MA0606.3 8 bp overlap
Motif DE_60h DE_60h-Nfat5_MA0606.3 8 bp overlap
Nfatc2 2 datasets
Motif DE_48h DE_48h-Nfatc2_MA0152.3 8 bp overlap
Motif DE_60h DE_60h-Nfatc2_MA0152.3 8 bp overlap
Nr2F6 1 dataset
Motif DE_48h DE_48h-Nr2F6_MA0728.1 15 bp overlap
PATZ1 2 datasets
Motif DE_48h DE_48h-PATZ1_MA1961.2 11 bp overlap
Motif DE_60h DE_60h-PATZ1_MA1961.2 11 bp overlap
PBX1 1 dataset
Motif DE_72h DE_72h-PBX1_MA0070.2 9 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 357 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 171 bp overlap
PRDM9 1 dataset
Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap
Rarg 1 dataset
Motif DE_48h DE_48h-Rarg_MA0859.2 15 bp overlap
Rhox11 1 dataset
Motif DE_72h DE_72h-Rhox11_MA0629.2 9 bp overlap
SIX5 7 datasets
ChIP GM12878 ENCFF766FEJ 180 bp overlap
ChIP GM12878 ENCSR000BJE.SIX5.GM12878 147 bp overlap
ChIP H1 ENCFF942SOJ 152 bp overlap
ChIP K-562 ENCSR000BGX.SIX5.K-562 157 bp overlap
ChIP K-562 ENCSR000BNW.SIX5.K-562 109 bp overlap
ChIP K562 ENCFF637NIL 164 bp overlap
ChIP WA01 ENCSR000BIQ.SIX5.WA01 155 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 289 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 443 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 308 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 378 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 314 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 375 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 264 bp overlap
SP3 2 datasets
Motif DE_48h DE_48h-SP3_MA0746.3 11 bp overlap
Motif DE_60h DE_60h-SP3_MA0746.3 11 bp overlap
TCF7L2 2 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 276 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 271 bp overlap
TFAP4 1 dataset
Motif DE_72h DE_72h-TFAP4_MA1570.1 10 bp overlap
TFEB 1 dataset
Motif DE_72h DE_72h-TFEB_MA0692.2 8 bp overlap
TFEC 1 dataset
Motif DE_72h DE_72h-TFEC_MA0871.3 8 bp overlap
TP73 1 dataset
Motif DE_72h DE_72h-TP73_MA0861.2 16 bp overlap
USF1 15 datasets
ChIP A-549 ENCSR000BJB.USF1.A-549 156 bp overlap
ChIP A-549 ENCSR000BPV.USF1.A-549 130 bp overlap
Motif DE_72h DE_72h-USF1_MA0093.4 10 bp overlap
ChIP H1 ENCFF090WVU 133 bp overlap
ChIP HCT-116 ENCSR000BVK.USF1.HCT-116 195 bp overlap
ChIP HCT116 ENCFF330PYP 267 bp overlap
ChIP Ishikawa ENCFF728IEG 221 bp overlap
ChIP Ishikawa ENCSR000BSX.USF1.Ishikawa 186 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 220 bp overlap
ChIP K562 ENCFF633EZB 74 bp overlap
ChIP SK-N-SH ENCFF967PDP 238 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 177 bp overlap
ChIP SK-N-SH ENCSR000BTZ.USF1.SK-N-SH 157 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 229 bp overlap
ChIP WTC11 ENCFF699QGS 316 bp overlap
USF2 4 datasets
ChIP GM12878 GSE97661.USF2.GM12878 250 bp overlap
ChIP K-562 ENCSR578KEN.USF2.K-562 152 bp overlap
ChIP K562 ENCFF397QGU 228 bp overlap
ChIP WTC11 ENCFF139JAW 161 bp overlap
VEZF1 1 dataset
Motif DE_48h DE_48h-VEZF1_MA1578.2 6 bp overlap
Vdr 1 dataset
Motif DE_72h DE_72h-Vdr_MA0693.4 7 bp overlap
Wt1 1 dataset
Motif DE_48h DE_48h-Wt1_MA1627.2 10 bp overlap
YY1 1 dataset
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 161 bp overlap
ZBTB33 1 dataset
ChIP K562 ENCFF875HLX 125 bp overlap
ZBTB7B 2 datasets
Motif DE_48h DE_48h-ZBTB7B_MA0694.2 10 bp overlap
Motif DE_60h DE_60h-ZBTB7B_MA0694.2 10 bp overlap
ZEB1 1 dataset
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ZIC1 1 dataset
Motif DE_48h DE_48h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_48h DE_48h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_48h DE_48h-ZIC5_MA1584.2 15 bp overlap
ZNF143 12 datasets
ChIP CUTLL1 GSE29600.ZNF143.CUTLL1 200 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 150 bp overlap
ChIP GM12878 ENCSR936XTK.ZNF143.GM12878 243 bp overlap
ChIP HEK293T GSE39263.ZNF143.HEK293T 145 bp overlap
ChIP K-562 ENCSR000EGP.ZNF143.K-562 178 bp overlap
ChIP K562 ENCFF554TVF 333 bp overlap
ChIP MCF-7 GSE76454.ZNF143.MCF-7 261 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 235 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 147 bp overlap
ChIP WA09 GSE105028.ZNF143.WA09 327 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 227 bp overlap
ChIP WTC11 ENCFF249JUK 332 bp overlap
ZNF182 1 dataset
ChIP HEK293T GSE78099.ZNF182.HEK293T 146 bp overlap
ZNF341 1 dataset
Motif DE_60h DE_60h-ZNF341_MA1655.2 8 bp overlap
ZNF449 2 datasets
Motif DE_48h DE_48h-ZNF449_MA1656.2 10 bp overlap
Motif DE_60h DE_60h-ZNF449_MA1656.2 10 bp overlap
ZNF652 2 datasets
Motif DE_48h DE_48h-ZNF652_MA1657.2 9 bp overlap
Motif DE_60h DE_60h-ZNF652_MA1657.2 9 bp overlap
ZNF667 2 datasets
Motif DE_48h DE_48h-ZNF667_MA1984.2 11 bp overlap
Motif DE_72h DE_72h-ZNF667_MA1984.2 11 bp overlap
ZNF740 1 dataset
Motif DE_48h DE_48h-ZNF740_MA0753.3 10 bp overlap
Zic2 1 dataset
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap