chr4 : 176,193,322 176,193,538
216 bp 55 TFs 1 linked gene
This 216 bp open chromatin element is linked to SPATA4 and is bound by 55 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SPATA4 2.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:176,188,322 – 176,198,538
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
AR 1 dataset
ChIP LHSAR_HOXB13 GSE56288.AR.LHSAR_HOXB13 119 bp overlap
ARID1A 2 datasets
ChIP 12Z GSE129781.ARID1A.12Z 152 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 190 bp overlap
BHLHE40 2 datasets
ChIP IMR-90 ENCFF312JYK 192 bp overlap
ChIP IMR-90 ENCSR957KYB.BHLHE40.IMR-90 176 bp overlap
BRD2 4 datasets
ChIP MDA-MB-231_BAZ2AsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA 216 bp overlap
ChIP MDA-MB-231_BAZ2BsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2BsiRNA 154 bp overlap
ChIP MDA-MB-231_NTsiRNA GSE116879.BRD2.MDA-MB-231_NTsiRNA 216 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 210 bp overlap
BRD4 18 datasets
ChIP HUVEC-C_TNF GSE53998.BRD4.HUVEC-C_TNF 143 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 216 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 216 bp overlap
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 216 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 216 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 216 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 216 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 216 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 216 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 201 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 216 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 216 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 99 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 216 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 162 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 108 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 216 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 216 bp overlap
BRD9 1 dataset
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD9.MDA-MB-231_MGSK2801 216 bp overlap
CHD1 1 dataset
ChIP IMR-90 ENCSR000EFC.CHD1.IMR-90 163 bp overlap
CREBBP 2 datasets
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 117 bp overlap
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 172 bp overlap
E2F1 1 dataset
ChIP MDA-MB-231 GSE95303.E2F1.MDA-MB-231 207 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 216 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 216 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 216 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 216 bp overlap
ERG 2 datasets
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 119 bp overlap
ChIP aortic-endothelial-cell_D13 GSE139377.ERG.aortic-endothelial-cell_D13 102 bp overlap
FOS 6 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 216 bp overlap
ChIP HeLa-S3 ENCSR000EZE.FOS.HeLa-S3 55 bp overlap
ChIP IMR-90 ENCFF179EDA 131 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 89 bp overlap
ChIP endothelial cell of umbilical vein ENCFF415XBG 171 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 105 bp overlap
FOSL1 2 datasets
ChIP HCT-116 ENCSR000BTE.FOSL1.HCT-116 85 bp overlap
ChIP HCT116 ENCFF540ZXN 175 bp overlap
FOXA1 6 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 216 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 216 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 216 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 153 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 216 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 216 bp overlap
FOXA2 6 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 103 bp overlap
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 131 bp overlap
ChIP BJ1-hTERT_Mimo_Release GSE90454.FOXA2.BJ1-hTERT_Mimo_Release 143 bp overlap
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 216 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 216 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 216 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 216 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 216 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 216 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 216 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 216 bp overlap
HIF1A 1 dataset
ChIP PC-3_hypoxia_siCtrl GSE106305.HIF1A.PC-3_hypoxia_siCtrl 146 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 123 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 216 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 210 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 119 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 165 bp overlap
JUN 8 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 216 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 216 bp overlap
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 108 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 81 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 216 bp overlap
ChIP endothelial cell of umbilical vein ENCFF791BMV 103 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EFA.JUN.endothelial_umbilical-vein 125 bp overlap
ChIP primary-lung-fibroblast_OE GSE114844.JUN.primary-lung-fibroblast_OE 96 bp overlap
JUNB 3 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 216 bp overlap
ChIP HAEC GSE89970.JUNB.HAEC 161 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 63 bp overlap
JUND 4 datasets
ChIP HCT-116 ENCSR000BSA.JUND.HCT-116 122 bp overlap
ChIP HCT116 ENCFF748ZQX 214 bp overlap
ChIP SK-N-SH ENCFF971JKN 117 bp overlap
ChIP SK-N-SH ENCSR000EIB.JUND.SK-N-SH 75 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 102 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 126 bp overlap
MED1 1 dataset
ChIP U-87MG GSE36354.MED1.U-87MG 216 bp overlap
MYC 1 dataset
ChIP MCF-10A ENCSR000DOS.MYC.MCF-10A 64 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 97 bp overlap
NR3C1 2 datasets
ChIP IMR-90 ERP007093.NR3C1.IMR-90 106 bp overlap
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 101 bp overlap
PHIP 2 datasets
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 216 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 216 bp overlap
POLR2A 3 datasets
ChIP gastroesophageal sphincter ENCFF070PCA 200 bp overlap
ChIP stomach ENCFF607ZPU 203 bp overlap
ChIP stomach ENCFF820WZN 206 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 178 bp overlap
RBPJ 2 datasets
ChIP SCC_0h GSE156486.RBPJ.SCC_0h 154 bp overlap
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 171 bp overlap
RELA 16 datasets
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 93 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 95 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 176 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 84 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 191 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 62 bp overlap
ChIP aortic-endothelial-cell_IL1B_D35 GSE139377.RELA.aortic-endothelial-cell_IL1B_D35 61 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 127 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 126 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 105 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 50 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 143 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 75 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 67 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 68 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 182 bp overlap
RING1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.RING1.SYO-1_shRING1A-B 216 bp overlap
RNF2 2 datasets
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 216 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 216 bp overlap
SATB1 1 dataset
ChIP MCF-10A_dHD GSE123292.SATB1.MCF-10A_dHD 129 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 216 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 216 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 216 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 216 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 103 bp overlap
SMAD3 2 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 93 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 135 bp overlap
SMARCA4 1 dataset
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 58 bp overlap
SMARCB1 2 datasets
ChIP proliferating-human-fibroblast GSE131711.SMARCB1.proliferating-human-fibroblast 168 bp overlap
ChIP proliferating-human-fibroblast_ASO_LINC GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_LINC 107 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 216 bp overlap
SP1 1 dataset
ChIP HCT-116 ENCSR000BSF.SP1.HCT-116 63 bp overlap
SS18 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 216 bp overlap
STAT3 2 datasets
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 216 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 97 bp overlap
TEAD1 3 datasets
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 210 bp overlap
ChIP MSTO GSE68170.TEAD1.MSTO 103 bp overlap
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 162 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 97 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 97 bp overlap
TP53 1 dataset
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 98 bp overlap