chr4 : 170,581,303 – 170,582,299
996 bp 97 TFs 0 linked genes
This 996 bp open chromatin element has no linked target genes and is bound by 97 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:170,576,303 – 170,587,299
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
97 transcription factors
Source
Cell type
ARNT2 1 dataset
Motif DE_12h DE_12h-ARNT2_MA1464.2 8 bp overlap
ARNT::HIF1A 1 dataset
Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap
ATF3 2 datasets
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 172 bp overlap
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 175 bp overlap
Arid3a 1 dataset
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
Arnt 1 dataset
Motif DE_12h DE_12h-Arnt_MA0004.1 6 bp overlap
Arntl 1 dataset
Motif DE_12h DE_12h-Arntl_MA0603.2 8 bp overlap
Arx 1 dataset
Motif DE_12h DE_12h-Arx_MA0874.2 10 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BHLHE40 3 datasets
Motif DE_12h DE_12h-BHLHE40_MA0464.3 8 bp overlap
ChIP Hep-G2 ENCSR000EDT.BHLHE40.Hep-G2 204 bp overlap
ChIP HepG2 ENCFF961RID 297 bp overlap
BRD4 1 dataset
ChIP LNCaP-clone-FGC_DHT-ABBV-744 GSE118247.BRD4.LNCaP-clone-FGC_DHT-ABBV-744 226 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
Bach1::Mafk 2 datasets
Motif DE_12h DE_12h-Bach1Mafk_MA0591.2 12 bp overlap
Motif DE_24h DE_24h-Bach1Mafk_MA0591.2 12 bp overlap
CBX3 2 datasets
ChIP HCT-116 ENCSR000BUH.CBX3.HCT-116 162 bp overlap
ChIP HCT116 ENCFF947BOL 415 bp overlap
CTCF 3 datasets
ChIP GM23338 ENCFF832KWE 161 bp overlap
ChIP endothelial cell ENCFF663LIE 113 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 167 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 160 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 256 bp overlap
Crx 2 datasets
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
Motif DE_24h DE_24h-Crx_MA0467.3 6 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Dmbx1 2 datasets
Motif DE_12h DE_12h-Dmbx1_MA0883.2 10 bp overlap
Motif DE_24h DE_24h-Dmbx1_MA0883.2 10 bp overlap
EHF 2 datasets
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
Motif DE_24h DE_24h-EHF_MA0598.4 9 bp overlap
ELF3 2 datasets
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
Motif DE_24h DE_24h-ELF3_MA0640.3 9 bp overlap
EN2 1 dataset
Motif DE_12h DE_12h-EN2_MA0642.3 7 bp overlap
ERF::NHLH1 2 datasets
Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap
Motif DE_24h DE_24h-ERFNHLH1_MA1938.2 16 bp overlap
ETV7 2 datasets
Motif DE_12h DE_12h-ETV7_MA1708.2 9 bp overlap
Motif DE_24h DE_24h-ETV7_MA1708.2 9 bp overlap
GATA1 1 dataset
Motif DE_12h DE_12h-GATA1_MA0035.5 7 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 223 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 265 bp overlap
GATA6 2 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 256 bp overlap
ChIP foregut GSE117136.GATA6.foregut 261 bp overlap
GBX1 1 dataset
Motif DE_12h DE_12h-GBX1_MA0889.2 7 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
GSC 2 datasets
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
Motif DE_24h DE_24h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
Motif DE_24h DE_24h-GSC2_MA0891.2 6 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HIF1A 1 dataset
Motif DE_12h DE_12h-HIF1A_MA1106.2 6 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
HOXB13 1 dataset
Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap
Hmx1 1 dataset
Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
IRF6 2 datasets
Motif DE_12h DE_12h-IRF6_MA1509.1 9 bp overlap
Motif DE_24h DE_24h-IRF6_MA1509.1 9 bp overlap
IRF8 2 datasets
Motif DE_12h DE_12h-IRF8_MA0652.2 13 bp overlap
Motif DE_24h DE_24h-IRF8_MA0652.2 13 bp overlap
Irf1 2 datasets
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
Motif DE_24h DE_24h-Irf1_MA0050.4 11 bp overlap
JUND 1 dataset
ChIP HCT-116 ENCSR000BSA.JUND.HCT-116 130 bp overlap
LBX1 1 dataset
Motif DE_12h DE_12h-LBX1_MA0618.2 7 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
LHX9 1 dataset
Motif DE_12h DE_12h-LHX9_MA0701.3 7 bp overlap
MAF::NFE2 2 datasets
Motif DE_12h DE_12h-MAFNFE2_MA0501.2 11 bp overlap
Motif DE_24h DE_24h-MAFNFE2_MA0501.2 11 bp overlap
MAFG::NFE2L1 2 datasets
Motif DE_12h DE_12h-MAFGNFE2L1_MA0089.3 11 bp overlap
Motif DE_24h DE_24h-MAFGNFE2L1_MA0089.3 11 bp overlap
MAX 3 datasets
Motif DE_12h DE_12h-MAX_MA0058.4 6 bp overlap
ChIP HCT-116 ENCSR000BSH.MAX.HCT-116 163 bp overlap
ChIP MCF-7 ENCSR000BUL.MAX.MCF-7 147 bp overlap
MEIS1 4 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MNT 1 dataset
Motif DE_12h DE_12h-MNT_MA0825.2 6 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
Mlxip 1 dataset
Motif DE_12h DE_12h-Mlxip_MA0622.2 6 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
Nfe2l2 2 datasets
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
Motif DE_24h DE_24h-Nfe2l2_MA0150.3 11 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
OTX1 2 datasets
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
Motif DE_24h DE_24h-OTX1_MA0711.2 6 bp overlap
PITX1 2 datasets
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
Motif DE_24h DE_24h-PITX1_MA0682.3 6 bp overlap
PITX2 2 datasets
Motif DE_12h DE_12h-PITX2_MA1547.2 8 bp overlap
Motif DE_24h DE_24h-PITX2_MA1547.2 8 bp overlap
PITX3 2 datasets
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
Motif DE_24h DE_24h-PITX3_MA0714.2 6 bp overlap
PRRX2 1 dataset
Motif DE_12h DE_12h-PRRX2_MA0075.4 7 bp overlap
RARA::RXRG 1 dataset
Motif DE_12h DE_12h-RARARXRG_MA1149.2 17 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
RHOXF1 2 datasets
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_24h DE_24h-RHOXF1_MA0719.2 6 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap
SOHLH2 1 dataset
Motif DE_12h DE_12h-SOHLH2_MA1560.2 8 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX15 1 dataset
Motif DE_12h DE_12h-SOX15_MA1152.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 235 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 236 bp overlap
SOX4 1 dataset
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
SUPT5H 1 dataset
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 162 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Stat2 2 datasets
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
Motif DE_24h DE_24h-Stat2_MA1623.2 10 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 163 bp overlap
TCF3 1 dataset
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
TCF7L2 1 dataset
ChIP LNCaP GSE51621.TCF7L2.LNCaP 250 bp overlap
TCFL5 1 dataset
Motif DE_12h DE_12h-TCFL5_MA0632.3 8 bp overlap
USF1 3 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP HCT-116 ENCSR000BVK.USF1.HCT-116 141 bp overlap
ChIP HCT116 ENCFF330PYP 365 bp overlap
VENTX 1 dataset
Motif DE_12h DE_12h-VENTX_MA0724.1 9 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZKSCAN1 1 dataset
Motif DE_12h DE_12h-ZKSCAN1_MA1585.2 9 bp overlap
ZKSCAN5 2 datasets
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_24h DE_24h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF213 2 datasets
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
Motif DE_24h DE_24h-ZNF213_MA2121.1 12 bp overlap
ZNF418 2 datasets
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
Motif DE_24h DE_24h-ZNF418_MA1980.1 15 bp overlap
ZNF460 2 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_24h DE_24h-ZNF460_MA1596.1 16 bp overlap
ZNF707 1 dataset
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif DE_24h DE_24h-Zfp335_MA2002.2 7 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
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