chr1 : 82,978,568 – 82,979,266

698 bp 72 TFs 0 linked genes

This 698 bp open chromatin element has no linked target genes and is bound by 72 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

72 transcription factors

ASH2L 2 datasets

ChIP H1 ENCFF399KAM 698 bp overlap

ChIP WA01 ENCSR850KIP.ASH2L.WA01 680 bp overlap

Ascl2 1 dataset

Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap

BHLHE22 1 dataset

Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap

BRD4 1 dataset

ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 361 bp overlap

CHD1 1 dataset

ChIP WA01 ENCSR000AQK.CHD1.WA01 67 bp overlap

CTBP2 1 dataset

ChIP WA01 ENCSR000EUO.CTBP2.WA01 228 bp overlap

E2F4 1 dataset

ChIP MCF-10A ENCSR000DOR.E2F4.MCF-10A 197 bp overlap

ELF3 2 datasets

ChIP PDAC GSE64557.ELF3.PDAC 227 bp overlap

ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 304 bp overlap

ERF::FOXI1 1 dataset

Motif DE_12h DE_12h-ERFFOXI1_MA1935.2 10 bp overlap

ERG 1 dataset

ChIP VCaP GSE49091.ERG.VCaP 121 bp overlap

ESR1 1 dataset

ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 289 bp overlap

ETV1 1 dataset

Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap

ETV2::FOXI1 1 dataset

Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap

EWSR1-FLI1 1 dataset

Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap

FOS 1 dataset

ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 164 bp overlap

FOXA2 1 dataset

ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 310 bp overlap

FOXJ2::ELF1 1 dataset

Motif DE_12h DE_12h-FOXJ2ELF1_MA1952.2 11 bp overlap

FOXO1::ELK1 1 dataset

Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap

FOXO1::ELK3 1 dataset

Motif DE_12h DE_12h-FOXO1ELK3_MA1955.2 13 bp overlap

GATA6 2 datasets

ChIP DE_D1 S41-DE-d1-GATA6-exp2 253 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 414 bp overlap

GRHL2 3 datasets

ChIP HBE GSE46194.GRHL2.HBE 210 bp overlap

ChIP OVCA429 GSE71018.GRHL2.OVCA429 200 bp overlap

ChIP PEO1 GSE71018.GRHL2.PEO1 205 bp overlap

HDAC2 2 datasets

ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 134 bp overlap

ChIP WA01 ENCSR000BNR.HDAC2.WA01 155 bp overlap

HDAC3 1 dataset

ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 191 bp overlap

HSF1 2 datasets

ChIP MCF-7_hyperthermia-15min GSE137558.HSF1.MCF-7_hyperthermia-15min 180 bp overlap

ChIP WA09_heat-shock GSE105028.HSF1.WA09_heat-shock 232 bp overlap

IKZF1 1 dataset

Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap

IKZF2 1 dataset

Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap

Ikzf3 1 dataset

Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap

JUNB 1 dataset

ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 69 bp overlap

MITF 1 dataset

ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 121 bp overlap

MSC 1 dataset

Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap

MYOD1 1 dataset

ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 140 bp overlap

MYOG 1 dataset

Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap

NANOG 5 datasets

ChIP GM23338 ENCFF065NZG 311 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 197 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 518 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 454 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 334 bp overlap

NHLH1 1 dataset

Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap

NR1I3 1 dataset

Motif DE_12h DE_12h-NR1I3_MA1534.2 8 bp overlap

Neurod2 1 dataset

Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap

Olig2 1 dataset

Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap

POU2F2 1 dataset

Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap

POU5F1 4 datasets

ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 192 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 447 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 509 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 286 bp overlap

PPARG 1 dataset

Motif DE_12h DE_12h-PPARG_MA0066.2 19 bp overlap

RAD21 2 datasets

ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 328 bp overlap

ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 373 bp overlap

RBBP5 2 datasets

ChIP H1 ENCFF905HFL 671 bp overlap

ChIP WA01 ENCSR000AQC.RBBP5.WA01 587 bp overlap

Rarb 1 dataset

Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap

SIN3A 1 dataset

ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 210 bp overlap

SMAD2 1 dataset

ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 600 bp overlap

SMAD3 1 dataset

ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 205 bp overlap

SMARCA4 1 dataset

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 518 bp overlap

SMARCB1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 357 bp overlap

SMARCC1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 520 bp overlap

SNAI2 1 dataset

ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 205 bp overlap

SOX2 1 dataset

ChIP hiPSC GSE56567.SOX2.hiPSC 183 bp overlap

SP1 2 datasets

ChIP WA01 ENCSR000BIR.SP1.WA01 236 bp overlap

ChIP WA01 ENCSR000BIR.SP1.WA01 175 bp overlap

SRF 1 dataset

Motif DE_12h DE_12h-SRF_MA0083.3 16 bp overlap

Stat2 1 dataset

Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap

TAL1::TCF3 1 dataset

Motif DE_12h DE_12h-TAL1TCF3_MA0091.2 10 bp overlap

TEAD1 5 datasets

ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 193 bp overlap

ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 181 bp overlap

ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 340 bp overlap

ChIP keratinocyte GSE138727.TEAD1.keratinocyte 293 bp overlap

ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 181 bp overlap

TEAD4 14 datasets

ChIP H1 ENCFF778PAX 118 bp overlap

ChIP HUCCT1 GSE68296.TEAD4.HUCCT1 240 bp overlap

ChIP Ishikawa ENCFF772OTG 301 bp overlap

ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 149 bp overlap

ChIP MDA-MB-231 GSE66081.TEAD4.MDA-MB-231 249 bp overlap

ChIP MKN28 GSE44416.TEAD4.MKN28 240 bp overlap

ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 420 bp overlap

ChIP PC-9_1DF_DMSO GSE131687.TEAD4.PC-9_1DF_DMSO 388 bp overlap

ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 430 bp overlap

ChIP PC-9_2DF_DMSO GSE131687.TEAD4.PC-9_2DF_DMSO 566 bp overlap

ChIP SNU-216 GSE44416.TEAD4.SNU-216 580 bp overlap

ChIP T-47D_E2 GSE125594.TEAD4.T-47D_E2 254 bp overlap

ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 300 bp overlap

ChIP hESC GSE99202.TEAD4.hESC 247 bp overlap

TFAP4 2 datasets

Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap

ChIP DLD-1 GSE46935.TFAP4.DLD-1 123 bp overlap

TP53 1 dataset

ChIP SaOS-2 GSE15780.TP53.SaOS-2 209 bp overlap

Tcf12 1 dataset

Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap

Tcf21 1 dataset

Motif DE_12h DE_12h-Tcf21_MA0832.2 10 bp overlap

Twist2 1 dataset

Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap

YY1 3 datasets

ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 173 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 128 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 123 bp overlap

YY1AP1 6 datasets

ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 423 bp overlap

ChIP PC-9_1DF_DMSO GSE131687.YY1AP1.PC-9_1DF_DMSO 318 bp overlap

ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 509 bp overlap

ChIP PC-9_2DF_DMSO GSE131687.YY1AP1.PC-9_2DF_DMSO 356 bp overlap

ChIP T-47D_E2 GSE125594.YY1AP1.T-47D_E2 292 bp overlap

ChIP T-47D_Veh GSE125594.YY1AP1.T-47D_Veh 291 bp overlap

ZNF175 1 dataset

Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap

ZNF416 1 dataset

Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap

ZNF462 3 datasets

ChIP GM23338 ENCFF896CCA 251 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 234 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 219 bp overlap

ZNF582 1 dataset

Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap

ZSCAN4 1 dataset

Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap

Zic1::Zic2 1 dataset

Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap

Zic2 1 dataset

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap

Zic3 1 dataset

Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap