chr4 : 109,375,427 – 109,376,315
888 bp 86 TFs 4 linked genes
This 888 bp open chromatin element is linked to 4 target genes and is bound by 86 transcription factors.
Linked Genes
4 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SEC24B-AS1 57.9 kb Distal Multiome
SEC24B 57.9 kb Distal Multiome
COL25A1 73.1 kb Distal Multiome
MCUB 184.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:109,370,427 – 109,381,315
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
CEBPD 1 dataset
Motif DE_36h DE_36h-CEBPD_MA0836.3 8 bp overlap
CUX1 2 datasets
Motif DE_36h DE_36h-CUX1_MA0754.3 9 bp overlap
Motif DE_60h DE_60h-CUX1_MA0754.3 9 bp overlap
CUX2 2 datasets
Motif DE_36h DE_36h-CUX2_MA0755.2 9 bp overlap
Motif DE_60h DE_60h-CUX2_MA0755.2 9 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF274GAT 329 bp overlap
ChIP BLaER1 ENCFF364PUR 251 bp overlap
Crx 1 dataset
Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap
ELF1 1 dataset
Motif DE_36h DE_36h-ELF1_MA0473.4 9 bp overlap
EOMES 4 datasets
Motif DE_36h DE_36h-EOMES_MA0800.2 9 bp overlap
Motif DE_36h DE_36h-EOMES_MA0800.2 9 bp overlap
Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 280 bp overlap
ETS1 1 dataset
Motif DE_36h DE_36h-ETS1_MA0098.4 9 bp overlap
ETS2 1 dataset
Motif DE_36h DE_36h-ETS2_MA1484.2 9 bp overlap
ETV1 1 dataset
Motif DE_36h DE_36h-ETV1_MA0761.3 9 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_36h DE_36h-EWSR1-FLI1_MA0149.1 18 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 195 bp overlap
Elf5 1 dataset
Motif DE_36h DE_36h-Elf5_MA0136.4 8 bp overlap
Erg 1 dataset
Motif DE_36h DE_36h-Erg_MA0474.4 10 bp overlap
FIGLA 1 dataset
Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap
FOSL2 1 dataset
Motif DE_36h DE_36h-FOSL2_MA0478.2 10 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 508 bp overlap
ChIP DE DE-FOXA2-2 501 bp overlap
FOXS1 2 datasets
Motif DE_36h DE_36h-FOXS1_MA2118.1 8 bp overlap
Motif DE_60h DE_60h-FOXS1_MA2118.1 8 bp overlap
GABPA 1 dataset
Motif DE_36h DE_36h-GABPA_MA0062.4 10 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 421 bp overlap
ChIP DE DE-GATA4-2 451 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 528 bp overlap
ChIP DE DE-GATA6-2 446 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 261 bp overlap
GSC 1 dataset
Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap
IKZF2 1 dataset
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
ISL2 1 dataset
Motif DE_36h DE_36h-ISL2_MA0914.2 6 bp overlap
Ikzf3 1 dataset
Motif DE_36h DE_36h-Ikzf3_MA1992.2 9 bp overlap
Lhx3 2 datasets
Motif DE_36h DE_36h-Lhx3_MA0135.2 12 bp overlap
Motif DE_60h DE_60h-Lhx3_MA0135.2 12 bp overlap
MEIS1 2 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MGA 3 datasets
Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap
Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
MGA::EVX1 2 datasets
Motif DE_36h DE_36h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_60h DE_60h-MGAEVX1_MA1960.2 11 bp overlap
NEUROD1 1 dataset
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 186 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 187 bp overlap
NR6A1 1 dataset
Motif DE_36h DE_36h-NR6A1_MA1541.2 14 bp overlap
Nkx3-1 1 dataset
Motif DE_36h DE_36h-Nkx3-1_MA0124.3 7 bp overlap
Nkx3-2 1 dataset
Motif DE_36h DE_36h-Nkx3-2_MA0122.4 10 bp overlap
ONECUT1 2 datasets
Motif DE_36h DE_36h-ONECUT1_MA0679.3 9 bp overlap
Motif DE_60h DE_60h-ONECUT1_MA0679.3 9 bp overlap
ONECUT3 2 datasets
Motif DE_36h DE_36h-ONECUT3_MA0757.2 12 bp overlap
Motif DE_60h DE_60h-ONECUT3_MA0757.2 12 bp overlap
OTX1 1 dataset
Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_36h DE_36h-OTX2_MA0712.3 7 bp overlap
PGR 1 dataset
Motif DE_36h DE_36h-PGR_MA2327.1 9 bp overlap
PITX1 1 dataset
Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap
PKNOX2 1 dataset
Motif DE_36h DE_36h-PKNOX2_MA0783.1 12 bp overlap
Pax7 2 datasets
Motif DE_36h DE_36h-Pax7_MA0680.3 10 bp overlap
Motif DE_60h DE_60h-Pax7_MA0680.3 10 bp overlap
Prdm5 1 dataset
Motif DE_36h DE_36h-Prdm5_MA1999.2 11 bp overlap
Ptf1A 1 dataset
Motif DE_36h DE_36h-Ptf1A_MA1620.2 8 bp overlap
RBPJ 1 dataset
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
RHOXF1 1 dataset
Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 289 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 389 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 248 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 249 bp overlap
SNAI2 1 dataset
Motif DE_36h DE_36h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_36h DE_36h-SNAI3_MA1559.2 9 bp overlap
SOX10 1 dataset
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 351 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 495 bp overlap
SPIB 2 datasets
Motif DE_36h DE_36h-SPIB_MA0081.3 13 bp overlap
Motif DE_36h DE_36h-SPIB_MA0081.3 13 bp overlap
Sox11 1 dataset
Motif DE_36h DE_36h-Sox11_MA0869.3 8 bp overlap
Spi1 2 datasets
Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap
Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap
TBR1 3 datasets
Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap
Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap
Motif DE_60h DE_60h-TBR1_MA0802.2 9 bp overlap
TBX1 3 datasets
Motif DE_36h DE_36h-TBX1_MA0805.1 8 bp overlap
Motif DE_36h DE_36h-TBX1_MA0805.1 8 bp overlap
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
TBX15 3 datasets
Motif DE_36h DE_36h-TBX15_MA0803.1 8 bp overlap
Motif DE_36h DE_36h-TBX15_MA0803.1 8 bp overlap
Motif DE_60h DE_60h-TBX15_MA0803.1 8 bp overlap
TBX18 3 datasets
Motif DE_36h DE_36h-TBX18_MA1565.2 9 bp overlap
Motif DE_36h DE_36h-TBX18_MA1565.2 9 bp overlap
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
TBX2 3 datasets
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap
TBX20 2 datasets
Motif DE_36h DE_36h-TBX20_MA0689.1 11 bp overlap
Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap
TBX21 3 datasets
Motif DE_36h DE_36h-TBX21_MA0690.3 10 bp overlap
Motif DE_36h DE_36h-TBX21_MA0690.3 10 bp overlap
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
TBX3 3 datasets
Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap
Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap
Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap
TBX4 3 datasets
Motif DE_36h DE_36h-TBX4_MA0806.1 8 bp overlap
Motif DE_36h DE_36h-TBX4_MA0806.1 8 bp overlap
Motif DE_60h DE_60h-TBX4_MA0806.1 8 bp overlap
TBX5 3 datasets
Motif DE_36h DE_36h-TBX5_MA0807.1 8 bp overlap
Motif DE_36h DE_36h-TBX5_MA0807.1 8 bp overlap
Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap
TGIF1 1 dataset
Motif DE_36h DE_36h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_36h DE_36h-TGIF2_MA0797.1 12 bp overlap
TP53 1 dataset
ChIP IMR-90_SENES_SHLUC GSE42728.TP53.IMR-90_SENES_SHLUC 128 bp overlap
TP63 13 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 292 bp overlap
ChIP HaCaT_caRAS_TGFB GSE60814.TP63.HaCaT_caRAS_TGFB 158 bp overlap
ChIP MCF-10A_DCIS GSE72009.TP63.MCF-10A_DCIS 204 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 431 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 242 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 229 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 232 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 429 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 383 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 343 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 362 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 284 bp overlap
ChIP keratinocyte_epidermal_KDPAF GSE67382.TP63.keratinocyte_epidermal_KDPAF 197 bp overlap
Tbx6 3 datasets
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
ZBTB18 1 dataset
Motif DE_36h DE_36h-ZBTB18_MA0698.2 11 bp overlap
ZEB1 1 dataset
Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap
ZKSCAN5 1 dataset
Motif DE_36h DE_36h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF135 1 dataset
Motif DE_36h DE_36h-ZNF135_MA1587.1 14 bp overlap
ZNF143 1 dataset
Motif DE_36h DE_36h-ZNF143_MA0088.2 16 bp overlap
ZNF175 1 dataset
Motif DE_36h DE_36h-ZNF175_MA2332.1 9 bp overlap
ZNF341 2 datasets
Motif DE_36h DE_36h-ZNF341_MA1655.2 8 bp overlap
Motif DE_60h DE_60h-ZNF341_MA1655.2 8 bp overlap
ZNF384 2 datasets
ChIP Hep-G2 ENCSR101FJU.ZNF384.Hep-G2 223 bp overlap
ChIP HepG2 ENCFF129PLC 310 bp overlap
ZNF460 1 dataset
Motif DE_36h DE_36h-ZNF460_MA1596.1 16 bp overlap
ZNF75A 1 dataset
Motif DE_36h DE_36h-ZNF75A_MA2097.1 12 bp overlap
ZNF76 1 dataset
Motif DE_36h DE_36h-ZNF76_MA1716.2 17 bp overlap
ZNF784 2 datasets
Motif DE_36h DE_36h-ZNF784_MA1717.2 8 bp overlap
Motif DE_60h DE_60h-ZNF784_MA1717.2 8 bp overlap
Zfp809 1 dataset
Motif DE_36h DE_36h-Zfp809_MA2125.1 9 bp overlap
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