MCUB
mitochondrial calcium uniporter dominant negative subunit beta | FLJ20647, CCDC109B
Expression (TPM)
MCUB — as a Regulated Gene

TFs regulating MCUB 0 TFs

Transcription factors with Perturb-seq knockdown data for MCUB. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = MCUB upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to MCUB

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of MCUB, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr4:109,301,583–109,303,714 257.3 kb Distal (>10kb) Multiome 426
chr4:109,375,427–109,376,315 184.3 kb Distal (>10kb) Multiome 86
chr4:109,386,823–109,387,310 173.2 kb Distal (>10kb) Multiome 74
chr4:109,419,054–109,420,658 140.4 kb Distal (>10kb) Multiome 227
chr4:109,433,232–109,434,512 126.5 kb Distal (>10kb) Multiome 802
chr4:109,559,632–109,561,390 60 bp At TSS Multiome 756
chr4:109,701,412–109,703,899 143.2 kb Distal (>10kb) Multiome 799
chr4:109,729,247–109,730,761 169.9 kb Distal (>10kb) Multiome 793
chr4:109,814,867–109,816,081 255.3 kb Distal (>10kb) Multiome 846
chr4:109,846,257–109,847,050 286.5 kb Distal (>10kb) Multiome 131

Genome Browser

Genomic view of the MCUB locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr4:109,291,583 – 109,857,050
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq