chr1 : 71,357,592 – 71,358,225
633 bp 61 TFs 0 linked genes
This 633 bp open chromatin element has no linked target genes and is bound by 61 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:71,352,592 – 71,363,225
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
AR 1 dataset
ChIP myofibroblast GSE90772.AR.myofibroblast 292 bp overlap
ARNT 1 dataset
ChIP 501-mel GSE95280.ARNT.501-mel 282 bp overlap
BRD3 1 dataset
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 162 bp overlap
BRD4 3 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 402 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 183 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 74 bp overlap
CREB1 1 dataset
ChIP MDA-MB-134-VI GSE109103.CREB1.MDA-MB-134-VI 233 bp overlap
CTCF 148 datasets
ChIP A2780cis GSE143691.CTCF.A2780cis 224 bp overlap
ChIP AG04449 ENCFF248MBD 181 bp overlap
ChIP AG04450 ENCFF116DJL 297 bp overlap
ChIP AG09309 ENCFF478XPS 277 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 310 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif DE_36h DE_36h-CTCF_MA0139.2 15 bp overlap
Motif DE_36h DE_36h-CTCF_MA1929.2 31 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 135 bp overlap
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 109 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 217 bp overlap
ChIP GM12872 ENCFF697BYI 285 bp overlap
ChIP GM12872 ENCSR000DRN.CTCF.GM12872 183 bp overlap
ChIP GM12878 ENCSR000DZN.CTCF.GM12878 100 bp overlap
ChIP GM23338 ENCFF531QOI 278 bp overlap
ChIP GM23338 ENCFF772DML 205 bp overlap
ChIP H1 ENCFF230QSV 91 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 175 bp overlap
ChIP H9 ENCFF152GTF 354 bp overlap
ChIP HEK293 ENCFF498RMM 261 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 200 bp overlap
ChIP HEK293T GSE103651.CTCF.HEK293T 71 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 200 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 154 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 183 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 118 bp overlap
ChIP Jurkat GSE130140.CTCF.Jurkat 165 bp overlap
ChIP Jurkat_DMSO GSE130140.CTCF.Jurkat_DMSO 169 bp overlap
ChIP Jurkat_GSI3d_w4hr GSE130140.CTCF.Jurkat_GSI3d_w4hr 190 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 354 bp overlap
ChIP K-562 GSE70482.CTCF.K-562 337 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 254 bp overlap
ChIP K-562 GSE110681.CTCF.K-562 186 bp overlap
ChIP K-562 ENCSR000DWE.CTCF.K-562 171 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 163 bp overlap
ChIP K-562_11698 GSE131349.CTCF.K-562_11698 240 bp overlap
ChIP K-562_12040 GSE131349.CTCF.K-562_12040 169 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 199 bp overlap
ChIP K-562_13189 GSE131349.CTCF.K-562_13189 202 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 189 bp overlap
ChIP K-562_14376 GSE131349.CTCF.K-562_14376 175 bp overlap
ChIP K-562_15173 GSE131349.CTCF.K-562_15173 167 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 190 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 235 bp overlap
ChIP K-562_8005 GSE131349.CTCF.K-562_8005 208 bp overlap
ChIP K-562_CRISPRa_N4293 GSE131349.CTCF.K-562_CRISPRa_N4293 144 bp overlap
ChIP K-562_CRISPRk_N4293 GSE131349.CTCF.K-562_CRISPRk_N4293 195 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 383 bp overlap
ChIP K-562_MonoN GSE137216.CTCF.K-562_MonoN 142 bp overlap
ChIP K-562_RF2-mutation GSE140868.CTCF.K-562_RF2-mutation 259 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 303 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.CTCF.K-562_enCRISPRi-KL 224 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.CTCF.K-562_enCRISPRi-LK 317 bp overlap
ChIP K562 ENCFF082GOI 185 bp overlap
ChIP K562 ENCFF430KTH 425 bp overlap
ChIP K562 ENCFF598YSU 271 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCFF954TUV 205 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 348 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 169 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 241 bp overlap
ChIP MCF-7_HYPOXIA GSE78113.CTCF.MCF-7_HYPOXIA 355 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 353 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 347 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 259 bp overlap
ChIP SUM159 GSE46055.CTCF.SUM159 139 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 329 bp overlap
ChIP T-47D_NaCl-7-5min GSE111923.CTCF.T-47D_NaCl-7-5min 248 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 375 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 397 bp overlap
ChIP T-47D_serum GSE120162.CTCF.T-47D_serum 205 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 195 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 175 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 250 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WI-38 ENCSR000DYB.CTCF.WI-38 220 bp overlap
ChIP WI38 ENCFF841AXJ 317 bp overlap
ChIP WTC11 ENCFF658QVH 485 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 235 bp overlap
ChIP bronchial epithelial cell ENCFF500SEA 271 bp overlap
ChIP cardiac fibroblast ENCFF326EDY 265 bp overlap
ChIP cardiac muscle cell ENCFF728JSA 365 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 365 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 331 bp overlap
ChIP cardiac_muscle ENCSR000DTI.CTCF.cardiac_muscle 310 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 277 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 195 bp overlap
ChIP endodermal cell ENCFF471YCZ 328 bp overlap
ChIP endodermal cell ENCFF471YCZ 368 bp overlap
ChIP endothelial cell of umbilical vein ENCFF455OQM 197 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 167 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ALA.CTCF.endothelial_umbilical-vein 240 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DLW.CTCF.endothelial_umbilical-vein 179 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 112 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 305 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 554 bp overlap
ChIP epithelial_esophagus ENCSR000DTR.CTCF.epithelial_esophagus 202 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 258 bp overlap
ChIP epithelial_mammary ENCSR000DUS.CTCF.epithelial_mammary 257 bp overlap
ChIP epithelial_mammary ENCSR000ALV.CTCF.epithelial_mammary 220 bp overlap
ChIP erythroid GSE67783.CTCF.erythroid 190 bp overlap
ChIP fibroblast of pulmonary artery ENCFF742RSV 297 bp overlap
ChIP fibroblast of the aortic adventitia ENCFF639DMR 217 bp overlap
ChIP fibroblast of villous mesenchyme ENCFF345VQO 321 bp overlap
ChIP fibroblast_AORTIC_ADVENTITIA ENCSR000DPY.CTCF.fibroblast_AORTIC_ADVENTITIA 144 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 263 bp overlap
ChIP fibroblast_LUNG ENCSR000ANO.CTCF.fibroblast_LUNG 176 bp overlap
ChIP fibroblast_LUNG ENCSR000DPM.CTCF.fibroblast_LUNG 175 bp overlap
ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 337 bp overlap
ChIP fibroblast_SKIN_LEG ENCSR000DPG.CTCF.fibroblast_SKIN_LEG 147 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 216 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 600 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 472 bp overlap
ChIP hESC GSE20650.CTCF.hESC 130 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 204 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 202 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 482 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 349 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 153 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 162 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 216 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 223 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 141 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 149 bp overlap
ChIP keratinocyte ENCFF046PBT 90 bp overlap
ChIP keratinocyte ENCFF291YDC 83 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 187 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 205 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 178 bp overlap
ChIP kidney epithelial cell ENCFF173LWY 297 bp overlap
ChIP mammary epithelial cell ENCFF164SPU 107 bp overlap
ChIP mammary epithelial cell ENCFF873ERE 271 bp overlap
ChIP nephron progenitor cell ENCFF455DMI 498 bp overlap
ChIP neural crest cell ENCFF182LWK 471 bp overlap
ChIP neural progenitor cell ENCFF420RBO 219 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 345 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 392 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 179 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 158 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 293 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 145 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 599 bp overlap
ChIP smooth muscle cell ENCFF656FBT 357 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 284 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 457 bp overlap
E2F6 2 datasets
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 109 bp overlap
E2F8 1 dataset
Motif DE_12h DE_12h-E2F8_MA0865.3 9 bp overlap
ESR1 2 datasets
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 469 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 357 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 128 bp overlap
ETV2::FIGLA 2 datasets
Motif DE_12h DE_12h-ETV2FIGLA_MA1941.2 13 bp overlap
Motif DE_36h DE_36h-ETV2FIGLA_MA1941.2 13 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
GSPT2 1 dataset
ChIP HEK293T GSE35197.GSPT2.HEK293T 274 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 424 bp overlap
HDAC2 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 324 bp overlap
KDM5B 2 datasets
ChIP SUM159 GSE46055.KDM5B.SUM159 125 bp overlap
ChIP T-47D GSE46055.KDM5B.T-47D 155 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
MYC 1 dataset
ChIP OVCAR-3 GSE154941.MYC.OVCAR-3 59 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PKNOX1 1 dataset
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 268 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 260 bp overlap
PPARG 1 dataset
ChIP HUVEC-C_DMSO_HYPO GSE50144.PPARG.HUVEC-C_DMSO_HYPO 182 bp overlap
RAD21 15 datasets
ChIP H1 ENCFF698EWO 163 bp overlap
ChIP H1 ENCFF967OJF 125 bp overlap
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 209 bp overlap
ChIP HUVEC-C_normoxia GSE94872.RAD21.HUVEC-C_normoxia 291 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 132 bp overlap
ChIP K562 ENCFF169SQI 171 bp overlap
ChIP K562 ENCFF634XYR 365 bp overlap
ChIP MCF-7 GSE137216.RAD21.MCF-7 272 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 312 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 296 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 174 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 163 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 264 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 145 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 139 bp overlap
RORA 1 dataset
Motif DE_12h DE_12h-RORA_MA0071.1 10 bp overlap
RORB 1 dataset
Motif DE_12h DE_12h-RORB_MA1150.2 10 bp overlap
RORC 1 dataset
Motif DE_12h DE_12h-RORC_MA1151.2 10 bp overlap
RUNX1 2 datasets
ChIP AML_age-50-70 GSE111821.RUNX1.AML_age-50-70 291 bp overlap
ChIP Jurkat GSE85524.RUNX1.Jurkat 181 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 93 bp overlap
SMC1 2 datasets
ChIP DKO GSE131606.SMC1.DKO 514 bp overlap
ChIP HCAEC GSE101921.SMC1.HCAEC 517 bp overlap
SMC1A 1 dataset
ChIP MCF-7_EtOH GSE115602.SMC1A.MCF-7_EtOH 226 bp overlap
SMC3 5 datasets
ChIP HEK293T_CRISPR GSE122299.SMC3.HEK293T_CRISPR 331 bp overlap
ChIP HeLa GSE126990.SMC3.HeLa 203 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 203 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 203 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 190 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 72 bp overlap
STAG1 1 dataset
ChIP HCAEC GSE101921.STAG1.HCAEC 242 bp overlap
STAG2 1 dataset
ChIP HCAEC GSE101921.STAG2.HCAEC 162 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 278 bp overlap
TFDP1 1 dataset
Motif DE_12h DE_12h-TFDP1_MA1122.2 8 bp overlap
VEZF1 1 dataset
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
YY1 1 dataset
ChIP HEK293T_control GSE128106.YY1.HEK293T_control 300 bp overlap
ZBTB14 2 datasets
Motif DE_12h DE_12h-ZBTB14_MA1650.2 8 bp overlap
Motif DE_36h DE_36h-ZBTB14_MA1650.2 8 bp overlap
ZFP57 1 dataset
ChIP hESC GSE115387.ZFP57.hESC 264 bp overlap
ZFX 1 dataset
ChIP MCF-7 GSE102616.ZFX.MCF-7 342 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 297 bp overlap
ZNF143 3 datasets
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 178 bp overlap
ChIP HeLa GSE39263.ZNF143.HeLa 201 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 132 bp overlap
ZNF354C 2 datasets
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_36h DE_36h-ZNF354C_MA0130.1 6 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 245 bp overlap
ZNF770 2 datasets
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
Motif DE_36h DE_36h-ZNF770_MA2099.1 8 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zic1::Zic2 1 dataset
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
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