chr3 : 183,430,650 – 183,431,149
499 bp 49 TFs 1 linked gene
This 499 bp open chromatin element is linked to MCF2L2 and is bound by 49 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
MCF2L2 2.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:183,425,650 – 183,436,149
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
49 transcription factors
Source
Cell type
ATF7 2 datasets
ChIP GM12878 ENCFF037PYH 301 bp overlap
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 189 bp overlap
BATF3 1 dataset
ChIP KK-1_BirA GSE94732.BATF3.KK-1_BirA 54 bp overlap
BMI1 1 dataset
ChIP GM12878 ENCSR469WII.BMI1.GM12878 171 bp overlap
BRD4 1 dataset
ChIP KK-1_DMSO GSE94732.BRD4.KK-1_DMSO 167 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 254 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 119 bp overlap
ChIP BLaER1 ENCFF460KDD 152 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCFF681AJV 336 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 275 bp overlap
ETS1 2 datasets
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 334 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 237 bp overlap
ETV6 1 dataset
ChIP GM12878 GSE97661.ETV6.GM12878 126 bp overlap
FLI1 2 datasets
ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 296 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.FLI1.CTV-1_DSG_SPI1-mut 176 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 187 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 312 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 499 bp overlap
ChIP DE DE-GATA4-2 499 bp overlap
ChIP foregut GSE117136.GATA4.foregut 266 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 426 bp overlap
ChIP DE DE-GATA6-2 499 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 406 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 422 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 407 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 499 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 499 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 441 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 418 bp overlap
HDAC1 1 dataset
ChIP K-562_dilution-6-100 GSE140325.HDAC1.K-562_dilution-6-100 72 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 245 bp overlap
IKZF1 5 datasets
ChIP GM12878 ENCFF753XDO 253 bp overlap
ChIP GM12878 ENCFF824TGK 332 bp overlap
ChIP GM12878 ENCFF824TGK 499 bp overlap
ChIP K-562 ENCSR395HWC.IKZF1.K-562 287 bp overlap
ChIP K562 ENCFF348IBL 211 bp overlap
IKZF2 3 datasets
ChIP GM12878 ENCFF238LYK 252 bp overlap
ChIP GM12878 ENCFF918AID 349 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 226 bp overlap
IRF4 2 datasets
ChIP B-cell GSE142493.IRF4.B-cell 170 bp overlap
ChIP BC-3 GSE132777.IRF4.BC-3 128 bp overlap
JUN 1 dataset
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 104 bp overlap
JUNB 2 datasets
ChIP GM12878 ENCFF667EJQ 239 bp overlap
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 142 bp overlap
KDM1A 2 datasets
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 246 bp overlap
ChIP SET-2_GSK GSE121424.KDM1A.SET-2_GSK 103 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 299 bp overlap
MEIS1 1 dataset
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 151 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 180 bp overlap
ChIP K562 ENCFF320GSD 215 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 139 bp overlap
MTA1 1 dataset
ChIP K-562 ENCSR807BGP.MTA1.K-562 169 bp overlap
MYB 1 dataset
ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 111 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 105 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 137 bp overlap
PBX3 1 dataset
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 112 bp overlap
PKNOX1 3 datasets
ChIP GM12878 ENCFF589FCY 276 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 288 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 99 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 232 bp overlap
RELA 3 datasets
ChIP CD4_Th1_DMSO GSE62482.RELA.CD4_Th1_DMSO 80 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 65 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 57 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 62 bp overlap
RFX1 5 datasets
ChIP K-562 ENCSR041AXL.RFX1.K-562 284 bp overlap
ChIP K-562 ENCSR968GIB.RFX1.K-562 316 bp overlap
ChIP K562 ENCFF421AVO 210 bp overlap
ChIP K562 ENCFF421AVO 457 bp overlap
ChIP K562 ENCFF809XVG 128 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 416 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 383 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 330 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 499 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 217 bp overlap
SMARCA4 7 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 347 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 257 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 351 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 229 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 284 bp overlap
ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 321 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 173 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 200 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 499 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 229 bp overlap
SPI1 19 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 213 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 258 bp overlap
ChIP CTV-1_delA GSE128835.SPI1.CTV-1_delA 270 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 328 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 234 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 250 bp overlap
ChIP DC_LPS GSE123347.SPI1.DC_LPS 115 bp overlap
ChIP HL-60 ENCFF645GBT 271 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 203 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 157 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 213 bp overlap
ChIP K562 ENCFF410ORC 205 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 162 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 178 bp overlap
ChIP macrophage_D7_donorP GSE128834.SPI1.macrophage_D7_donorP 176 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 178 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 179 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 254 bp overlap
ChIP primary-monocyte_4h_donorO GSE128834.SPI1.primary-monocyte_4h_donorO 150 bp overlap
TAL1 1 dataset
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 216 bp overlap
TBX21 2 datasets
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 152 bp overlap
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 205 bp overlap
TRIM22 1 dataset
ChIP GM12878 ENCSR835XKS.TRIM22.GM12878 175 bp overlap
ZNF24 4 datasets
ChIP K-562 ENCSR695EQB.ZNF24.K-562 437 bp overlap
ChIP K-562 ENCSR385AHH.ZNF24.K-562 214 bp overlap
ChIP K-562 ENCSR099NCH.ZNF24.K-562 327 bp overlap
ChIP K562 ENCFF877JCX 462 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 143 bp overlap
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