chr3 : 182,342,320 – 182,342,817
497 bp 67 TFs 0 linked genes
This 497 bp open chromatin element has no linked target genes and is bound by 67 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:182,337,320 – 182,347,817
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP GSE80256.AR.LNCaP 156 bp overlap
ChIP LNCaP_1F5 GSE30623.AR.LNCaP_1F5 152 bp overlap
ARNT 1 dataset
ChIP 501-mel GSE95280.ARNT.501-mel 232 bp overlap
ARNTL 1 dataset
ChIP U2OS GSE44236.ARNTL.U2OS 164 bp overlap
ATF3 1 dataset
ChIP HCT-116_DMSO GSE74355.ATF3.HCT-116_DMSO 122 bp overlap
CHD8 2 datasets
ChIP T-47D GSE62428.CHD8.T-47D 186 bp overlap
ChIP T-47D_R5020_5 GSE62428.CHD8.T-47D_R5020_5 177 bp overlap
CTCF 3 datasets
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 339 bp overlap
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 353 bp overlap
ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 277 bp overlap
DMRTA2 1 dataset
Motif DE_36h DE_36h-DMRTA2_MA1478.2 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 376 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 316 bp overlap
ChIP neural cell ENCFF442QNK 359 bp overlap
ESR1 2 datasets
ChIP MCF-7_estradiol-DHT_45min GSE99626.ESR1.MCF-7_estradiol-DHT_45min 243 bp overlap
ChIP T-47D_E2 GSE68356.ESR1.T-47D_E2 295 bp overlap
ESRRA 7 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 497 bp overlap
ChIP BT-474_EGF GSE81651.ESRRA.BT-474_EGF 396 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 497 bp overlap
Motif DE_36h DE_36h-ESRRA_MA0592.4 9 bp overlap
ChIP SK-BR-3 GSE81651.ESRRA.SK-BR-3 364 bp overlap
ChIP SK-BR-3_EGF GSE81651.ESRRA.SK-BR-3_EGF 443 bp overlap
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 377 bp overlap
ESRRB 1 dataset
Motif DE_36h DE_36h-ESRRB_MA0141.4 10 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 456 bp overlap
Esrrg 1 dataset
Motif DE_36h DE_36h-Esrrg_MA0643.2 9 bp overlap
FOXA1 1 dataset
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 122 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 300 bp overlap
FOXH1 1 dataset
Motif DE_36h DE_36h-FOXH1_MA0479.2 8 bp overlap
GATA1::TAL1 1 dataset
Motif DE_36h DE_36h-GATA1TAL1_MA0140.3 17 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 313 bp overlap
ChIP DE DE-GATA4-2 274 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 314 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 218 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 292 bp overlap
ChIP DE DE-GATA6-2 344 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 381 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 392 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 416 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 374 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 424 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 271 bp overlap
IKZF1 1 dataset
Motif DE_36h DE_36h-IKZF1_MA1508.2 8 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 308 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 339 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 343 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 335 bp overlap
MAF 1 dataset
Motif DE_36h DE_36h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_36h DE_36h-MAFA_MA1521.2 13 bp overlap
MEIS1 3 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA1639.2 9 bp overlap
MEIS2 2 datasets
Motif DE_36h DE_36h-MEIS2_MA0774.1 8 bp overlap
Motif DE_36h DE_36h-MEIS2_MA1640.2 9 bp overlap
NFIA 1 dataset
ChIP K-562 GSE97661.NFIA.K-562 372 bp overlap
NFIB 4 datasets
ChIP MCF-7 ENCFF799WGQ 271 bp overlap
ChIP MCF-7 ENCFF925CGH 283 bp overlap
ChIP MCF-7 ENCSR582ZOA.NFIB.MCF-7 352 bp overlap
ChIP MCF-7 ENCSR702BYX.NFIB.MCF-7 336 bp overlap
NFIC 2 datasets
ChIP K-562 ENCSR796ITY.NFIC.K-562 379 bp overlap
ChIP K562 ENCFF167YID 342 bp overlap
NFIX 2 datasets
ChIP K-562 ENCSR574VJG.NFIX.K-562 230 bp overlap
ChIP K562 ENCFF382SJS 298 bp overlap
NR5A1 1 dataset
Motif DE_36h DE_36h-NR5A1_MA1540.3 12 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 136 bp overlap
Nanog 1 dataset
Motif DE_36h DE_36h-Nanog_MA2339.1 7 bp overlap
Nr5A2 1 dataset
Motif DE_36h DE_36h-Nr5A2_MA0505.3 9 bp overlap
PBX1 1 dataset
Motif DE_36h DE_36h-PBX1_MA0070.2 9 bp overlap
PBX2 1 dataset
Motif DE_36h DE_36h-PBX2_MA1113.3 9 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 219 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 190 bp overlap
ChIP islet ERP001456.PDX1.islet 138 bp overlap
PGR 2 datasets
ChIP T-47D_E2PG GSE68356.PGR.T-47D_E2PG 163 bp overlap
ChIP T-47D_PG GSE68356.PGR.T-47D_PG 193 bp overlap
PKNOX1 1 dataset
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 207 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 136 bp overlap
POU2F2 1 dataset
ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 126 bp overlap
RELA 2 datasets
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 453 bp overlap
ChIP MCF-7_IL1b_45m GSE67295.RELA.MCF-7_IL1b_45m 144 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 133 bp overlap
RFX1 2 datasets
Motif DE_36h DE_36h-RFX1_MA0509.3 16 bp overlap
Motif DE_36h DE_36h-RFX1_MA0509.3 16 bp overlap
RFX2 2 datasets
Motif DE_36h DE_36h-RFX2_MA0600.3 14 bp overlap
Motif DE_36h DE_36h-RFX2_MA0600.3 14 bp overlap
RFX3 2 datasets
Motif DE_36h DE_36h-RFX3_MA0798.3 16 bp overlap
Motif DE_36h DE_36h-RFX3_MA0798.3 16 bp overlap
RFX5 2 datasets
Motif DE_36h DE_36h-RFX5_MA0510.3 14 bp overlap
Motif DE_36h DE_36h-RFX5_MA0510.3 14 bp overlap
RXRA::VDR 1 dataset
Motif DE_36h DE_36h-RXRAVDR_MA0074.1 15 bp overlap
Rhox11 1 dataset
Motif DE_36h DE_36h-Rhox11_MA0629.2 9 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 64 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 63 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 147 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 300 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 329 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 278 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 312 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 177 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 143 bp overlap
SMARCA4 1 dataset
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 284 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 267 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 308 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 288 bp overlap
TEAD1 1 dataset
Motif DE_36h DE_36h-TEAD1_MA0090.4 9 bp overlap
TEAD2 1 dataset
Motif DE_36h DE_36h-TEAD2_MA1121.2 7 bp overlap
TEAD3 1 dataset
Motif DE_36h DE_36h-TEAD3_MA0808.1 8 bp overlap
TEAD4 3 datasets
Motif DE_36h DE_36h-TEAD4_MA0809.3 8 bp overlap
Motif DE_36h DE_36h-TEAD4_MA0809.3 8 bp overlap
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 73 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 347 bp overlap
ZNF138 1 dataset
ChIP WTC11 ENCFF800FUU 184 bp overlap
ZNF140 1 dataset
Motif DE_36h DE_36h-ZNF140_MA1589.2 19 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 287 bp overlap
ZNF677 1 dataset
Motif DE_36h DE_36h-ZNF677_MA2101.1 12 bp overlap
ZNF823 1 dataset
ChIP HEK293T GSE78099.ZNF823.HEK293T 130 bp overlap
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