chr3 : 172,824,232 – 172,824,798

566 bp 85 TFs 0 linked genes

This 566 bp open chromatin element has no linked target genes and is bound by 85 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

85 transcription factors

ATF4 1 dataset

Motif DE_36h DE_36h-ATF4_MA0833.3 10 bp overlap

BARX1 1 dataset

Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap

BSX 1 dataset

Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap

CEBPG 1 dataset

Motif DE_36h DE_36h-CEBPG_MA1636.2 10 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF262VBH 251 bp overlap

DLX1 1 dataset

Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap

DUXA 1 dataset

Motif DE_36h DE_36h-DUXA_MA0884.2 13 bp overlap

Dlx3 1 dataset

Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap

Dux 1 dataset

Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap

EN2 1 dataset

Motif DE_36h DE_36h-EN2_MA0642.3 7 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 136 bp overlap

FOSB 2 datasets

ChIP A-549 ENCSR918GHT.FOSB.A-549 64 bp overlap

ChIP A549 ENCFF029EEU 259 bp overlap

FOXA1 2 datasets

Motif DE_48h DE_48h-FOXA1_MA0148.5 8 bp overlap

Motif DE_60h DE_60h-FOXA1_MA0148.5 8 bp overlap

FOXA2 4 datasets

ChIP DE DE-FOXA2-1 493 bp overlap

ChIP DE DE-FOXA2-2 566 bp overlap

Motif DE_48h DE_48h-FOXA2_MA0047.4 8 bp overlap

Motif DE_60h DE_60h-FOXA2_MA0047.4 8 bp overlap

FOXA3 2 datasets

Motif DE_48h DE_48h-FOXA3_MA1683.2 7 bp overlap

Motif DE_60h DE_60h-FOXA3_MA1683.2 7 bp overlap

FOXD1 2 datasets

Motif DE_48h DE_48h-FOXD1_MA0031.2 7 bp overlap

Motif DE_60h DE_60h-FOXD1_MA0031.2 7 bp overlap

FOXD3 2 datasets

Motif DE_48h DE_48h-FOXD3_MA0041.3 14 bp overlap

Motif DE_60h DE_60h-FOXD3_MA0041.3 14 bp overlap

FOXG1 2 datasets

Motif DE_48h DE_48h-FOXG1_MA0613.1 8 bp overlap

Motif DE_60h DE_60h-FOXG1_MA0613.1 8 bp overlap

FOXI1 2 datasets

Motif DE_48h DE_48h-FOXI1_MA0042.2 7 bp overlap

Motif DE_60h DE_60h-FOXI1_MA0042.2 7 bp overlap

FOXK1 2 datasets

Motif DE_48h DE_48h-FOXK1_MA0852.3 7 bp overlap

Motif DE_60h DE_60h-FOXK1_MA0852.3 7 bp overlap

FOXK2 2 datasets

Motif DE_48h DE_48h-FOXK2_MA1103.3 7 bp overlap

Motif DE_60h DE_60h-FOXK2_MA1103.3 7 bp overlap

FOXL1 2 datasets

Motif DE_48h DE_48h-FOXL1_MA0033.2 7 bp overlap

Motif DE_60h DE_60h-FOXL1_MA0033.2 7 bp overlap

FOXN3 2 datasets

Motif DE_48h DE_48h-FOXN3_MA1489.1 8 bp overlap

Motif DE_60h DE_60h-FOXN3_MA1489.1 8 bp overlap

FOXO4 2 datasets

Motif DE_48h DE_48h-FOXO4_MA0848.1 7 bp overlap

Motif DE_60h DE_60h-FOXO4_MA0848.1 7 bp overlap

FOXO6 2 datasets

Motif DE_48h DE_48h-FOXO6_MA0849.1 7 bp overlap

Motif DE_60h DE_60h-FOXO6_MA0849.1 7 bp overlap

FOXP1 2 datasets

Motif DE_48h DE_48h-FOXP1_MA0481.4 7 bp overlap

Motif DE_60h DE_60h-FOXP1_MA0481.4 7 bp overlap

FOXP2 2 datasets

Motif DE_48h DE_48h-FOXP2_MA0593.2 9 bp overlap

Motif DE_60h DE_60h-FOXP2_MA0593.2 9 bp overlap

FOXP3 2 datasets

Motif DE_48h DE_48h-FOXP3_MA0850.1 7 bp overlap

Motif DE_60h DE_60h-FOXP3_MA0850.1 7 bp overlap

FOXP4 2 datasets

Motif DE_48h DE_48h-FOXP4_MA2117.1 7 bp overlap

Motif DE_60h DE_60h-FOXP4_MA2117.1 7 bp overlap

FOXS1 2 datasets

Motif DE_48h DE_48h-FOXS1_MA2118.1 8 bp overlap

Motif DE_60h DE_60h-FOXS1_MA2118.1 8 bp overlap

Foxf1 2 datasets

Motif DE_48h DE_48h-Foxf1_MA1606.2 7 bp overlap

Motif DE_60h DE_60h-Foxf1_MA1606.2 7 bp overlap

Foxj2 2 datasets

Motif DE_48h DE_48h-Foxj2_MA0614.1 8 bp overlap

Motif DE_60h DE_60h-Foxj2_MA0614.1 8 bp overlap

Foxj3 2 datasets

Motif DE_48h DE_48h-Foxj3_MA0851.2 9 bp overlap

Motif DE_60h DE_60h-Foxj3_MA0851.2 9 bp overlap

Foxl2 2 datasets

Motif DE_48h DE_48h-Foxl2_MA1607.2 10 bp overlap

Motif DE_60h DE_60h-Foxl2_MA1607.2 10 bp overlap

Foxo1 2 datasets

Motif DE_48h DE_48h-Foxo1_MA0480.3 7 bp overlap

Motif DE_60h DE_60h-Foxo1_MA0480.3 7 bp overlap

Foxo3 2 datasets

Motif DE_48h DE_48h-Foxo3_MA0157.4 7 bp overlap

Motif DE_60h DE_60h-Foxo3_MA0157.4 7 bp overlap

Foxq1 2 datasets

Motif DE_48h DE_48h-Foxq1_MA0040.2 10 bp overlap

Motif DE_60h DE_60h-Foxq1_MA0040.2 10 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 401 bp overlap

ChIP DE DE-GATA4-2 514 bp overlap

GATA6 2 datasets

ChIP DE DE-GATA6-1 400 bp overlap

ChIP DE DE-GATA6-2 511 bp overlap

GBX1 1 dataset

Motif DE_36h DE_36h-GBX1_MA0889.2 7 bp overlap

GBX2 1 dataset

Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap

GLIS3 1 dataset

Motif DE_36h DE_36h-GLIS3_MA0737.1 14 bp overlap

HESX1 1 dataset

Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap

HOXA7 1 dataset

Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap

HOXC13 2 datasets

Motif DE_48h DE_48h-HOXC13_MA0907.2 9 bp overlap

Motif DE_60h DE_60h-HOXC13_MA0907.2 9 bp overlap

JUN 1 dataset

Motif DE_36h DE_36h-JUN_MA0488.2 10 bp overlap

LBX1 1 dataset

Motif DE_36h DE_36h-LBX1_MA0618.2 7 bp overlap

LBX2 1 dataset

Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap

LHX9 1 dataset

Motif DE_36h DE_36h-LHX9_MA0701.3 7 bp overlap

MAX 2 datasets

ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 171 bp overlap

ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 165 bp overlap

MGA::EVX1 1 dataset

Motif DE_36h DE_36h-MGAEVX1_MA1960.2 11 bp overlap

MORC2 2 datasets

ChIP H9 GSE95374.MORC2.H9 271 bp overlap

ChIP H9 GSE95374.MORC2.H9 103 bp overlap

MPHOSPH8 1 dataset

ChIP H9 GSE95374.MPHOSPH8.H9 185 bp overlap

MSX1 1 dataset

Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap

MYBL2 1 dataset

ChIP A-673 GSE119971.MYBL2.A-673 188 bp overlap

Msx3 1 dataset

Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap

Nobox 1 dataset

Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap

PAX5 4 datasets

ChIP GM12878 ENCSR000BHD.PAX5.GM12878 146 bp overlap

ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 127 bp overlap

ChIP NALM-6 GSE126300.PAX5.NALM-6 188 bp overlap

ChIP OCI-Ly7 GSE69558.PAX5.OCI-Ly7 229 bp overlap

PBX1 2 datasets

Motif DE_48h DE_48h-PBX1_MA0070.2 9 bp overlap

Motif DE_60h DE_60h-PBX1_MA0070.2 9 bp overlap

PHOX2A 1 dataset

Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap

PHOX2B 1 dataset

Motif DE_36h DE_36h-PHOX2B_MA0681.3 12 bp overlap

POLR2A 1 dataset

ChIP HCT116 ENCFF508RDJ 407 bp overlap

PRRX2 1 dataset

Motif DE_36h DE_36h-PRRX2_MA0075.4 7 bp overlap

RARA 1 dataset

Motif DE_36h DE_36h-RARA_MA0729.1 18 bp overlap

RAX 1 dataset

Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap

RORA 1 dataset

Motif DE_36h DE_36h-RORA_MA0072.2 11 bp overlap

SIX2 2 datasets

Motif DE_48h DE_48h-SIX2_MA1119.2 11 bp overlap

Motif DE_60h DE_60h-SIX2_MA1119.2 11 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 383 bp overlap

ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 380 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 295 bp overlap

SP5 1 dataset

Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap

SRY 2 datasets

Motif DE_48h DE_48h-SRY_MA0084.2 7 bp overlap

Motif DE_60h DE_60h-SRY_MA0084.2 7 bp overlap

SUPT5H 1 dataset

ChIP MOLT-4_SNS GSE89384.SUPT5H.MOLT-4_SNS 197 bp overlap

Stat6 1 dataset

Motif DE_36h DE_36h-Stat6_MA0520.2 10 bp overlap

TCOF1 1 dataset

ChIP HeLa GSE89420.TCOF1.HeLa 282 bp overlap

ZNF143 1 dataset

Motif DE_36h DE_36h-ZNF143_MA0088.2 16 bp overlap

ZNF189 2 datasets

Motif DE_48h DE_48h-ZNF189_MA1725.2 9 bp overlap

Motif DE_60h DE_60h-ZNF189_MA1725.2 9 bp overlap

ZNF274 2 datasets

Motif DE_48h DE_48h-ZNF274_MA1592.2 12 bp overlap

Motif DE_60h DE_60h-ZNF274_MA1592.2 12 bp overlap

ZNF341 1 dataset

Motif DE_48h DE_48h-ZNF341_MA1655.2 8 bp overlap

ZNF677 2 datasets

Motif DE_48h DE_48h-ZNF677_MA2101.1 12 bp overlap

Motif DE_60h DE_60h-ZNF677_MA2101.1 12 bp overlap

ZNF701 1 dataset

Motif DE_48h DE_48h-ZNF701_MA1987.2 17 bp overlap

ZNF76 1 dataset

Motif DE_36h DE_36h-ZNF76_MA1716.2 17 bp overlap