chr3 : 167,958,352 – 167,958,852

500 bp 78 TFs 1 linked gene

This 500 bp open chromatin element is linked to HMGN2P26 and is bound by 78 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
HMGN2P26		at TSS	At TSS	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

78 transcription factors

AR 2 datasets

ChIP DU145_FOXA1 GSE47987.AR.DU145_FOXA1 219 bp overlap

ChIP DU145_FOXA1_ARQ6540X GSE47987.AR.DU145_FOXA1_ARQ6540X 197 bp overlap

ASCL1 1 dataset

Motif DE_12h DE_12h-ASCL1_MA1100.3 8 bp overlap

Ascl2 1 dataset

Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap

BHLHE22 1 dataset

Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap

Bhlha15 1 dataset

Motif DE_12h DE_12h-Bhlha15_MA1472.3 8 bp overlap

CEBPA 2 datasets

ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 65 bp overlap

ChIP T-47D_siCtrl GSE132649.CEBPA.T-47D_siCtrl 51 bp overlap

CEBPG 2 datasets

ChIP K-562 ENCSR490LWA.CEBPG.K-562 63 bp overlap

ChIP K562 ENCFF783ADE 186 bp overlap

CREB1 1 dataset

ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 236 bp overlap

EOMES 1 dataset

Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap

ESR1 1 dataset

Motif DE_12h DE_12h-ESR1_MA0112.4 15 bp overlap

ESR2 1 dataset

Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap

FOS 1 dataset

ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 113 bp overlap

FOSL1 2 datasets

ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 131 bp overlap

ChIP K562 ENCFF455MKD 369 bp overlap

FOXA1 8 datasets

ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 107 bp overlap

ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 165 bp overlap

ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 186 bp overlap

ChIP HEK293_r261g_TFS GSE123618.FOXA1.HEK293_r261g_TFS 331 bp overlap

ChIP LNCaP_F266S_shFOXA1 GSE128883.FOXA1.LNCaP_F266S_shFOXA1 247 bp overlap

ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 109 bp overlap

ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 193 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 116 bp overlap

FOXA2 10 datasets

ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 318 bp overlap

ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 272 bp overlap

ChIP BJ1-hTERT_Mimo GSE90454.FOXA2.BJ1-hTERT_Mimo 289 bp overlap

ChIP BJ1-hTERT_Mimo GSE92491.FOXA2.BJ1-hTERT_Mimo 137 bp overlap

ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 243 bp overlap

ChIP BJ1-hTERT_Mimo_Release GSE90454.FOXA2.BJ1-hTERT_Mimo_Release 215 bp overlap

ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 192 bp overlap

ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 500 bp overlap

ChIP DE DE-FOXA2-1 141 bp overlap

ChIP KerCT GSE90454.FOXA2.KerCT 495 bp overlap

FOXO6 1 dataset

Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap

GATA2 1 dataset

ChIP TF1 GSE73207.GATA2.TF1 87 bp overlap

GATA4 4 datasets

ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 483 bp overlap

ChIP Hep-G2 GSE135714.GATA4.Hep-G2 274 bp overlap

ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 144 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 114 bp overlap

GATA6 1 dataset

ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 151 bp overlap

HIC2 1 dataset

Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap

HIF1A 1 dataset

ChIP macrophage_HYPO GSE43109.HIF1A.macrophage_HYPO 78 bp overlap

HOXB8 1 dataset

ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 280 bp overlap

HOXC6 1 dataset

ChIP 22Rv1 GSE129951.HOXC6.22Rv1 121 bp overlap

Hnf1A 1 dataset

Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap

INSM1 1 dataset

Motif DE_12h DE_12h-INSM1_MA0155.1 12 bp overlap

JUN 5 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 229 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 262 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 206 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 292 bp overlap

ChIP primary-lung-fibroblast_OE GSE114844.JUN.primary-lung-fibroblast_OE 81 bp overlap

JUNB 1 dataset

ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 175 bp overlap

LMO2 1 dataset

ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 56 bp overlap

Lef1 1 dataset

Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap

MEIS1 1 dataset

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

MGA::EVX1 1 dataset

Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap

MSC 1 dataset

Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap

MTF1 1 dataset

Motif DE_12h DE_12h-MTF1_MA0863.1 14 bp overlap

MXI1 1 dataset

Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap

MYF5 1 dataset

Motif DE_12h DE_12h-MYF5_MA1641.2 8 bp overlap

MYOD1 1 dataset

Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap

MYOG 1 dataset

Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap

NCOA1 1 dataset

ChIP LS180 GSE39277.NCOA1.LS180 103 bp overlap

NFIC::TLX1 1 dataset

Motif DE_12h DE_12h-NFICTLX1_MA0119.1 14 bp overlap

NHLH1 1 dataset

Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap

NHLH2 1 dataset

Motif DE_12h DE_12h-NHLH2_MA1529.2 16 bp overlap

NKX3-1 1 dataset

ChIP islet ERP004003.NKX3-1.islet 123 bp overlap

NRIP1 1 dataset

ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 143 bp overlap

Neurod2 1 dataset

Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap

ONECUT1 1 dataset

ChIP H9 ERP004206.ONECUT1.H9 136 bp overlap

Olig2 1 dataset

Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap

PDX1 5 datasets

ChIP hESC GSE58685.PDX1.hESC 53 bp overlap

ChIP hiPSC GSE125768.PDX1.hiPSC 253 bp overlap

ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 130 bp overlap

ChIP islet ERP001456.PDX1.islet 130 bp overlap

ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 232 bp overlap

PPARG 1 dataset

Motif DE_12h DE_12h-PPARG_MA0066.2 19 bp overlap

Ptf1A 1 dataset

Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap

RELA 1 dataset

ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 160 bp overlap

Rarb 2 datasets

Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap

Rarg 1 dataset

Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap

SCRT1 1 dataset

Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap

SCRT2 1 dataset

Motif DE_12h DE_12h-SCRT2_MA0744.3 10 bp overlap

SOX10 1 dataset

Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap

SOX4 1 dataset

Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap

Sox11 1 dataset

Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap

Spz1 1 dataset

Motif DE_12h DE_12h-Spz1_MA0111.1 11 bp overlap

TBR1 1 dataset

Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap

TBX18 1 dataset

Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap

TBX2 1 dataset

Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap

TBX20 1 dataset

Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap

TBX21 2 datasets

Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap

TBX3 1 dataset

Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap

TCF7 1 dataset

Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap

TCF7L1 1 dataset

Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap

TCF7L2 1 dataset

Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap

TFAP4 1 dataset

Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap

TFAP4::FLI1 1 dataset

Motif DE_12h DE_12h-TFAP4FLI1_MA1967.2 14 bp overlap

Tbx6 2 datasets

Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap

Tcf12 1 dataset

Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap

Thap11 1 dataset

Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap

Twist2 1 dataset

Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap

USF1 1 dataset

Motif DE_12h DE_12h-USF1_MA0093.4 10 bp overlap

ZBTB24 1 dataset

Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap

ZEB2 1 dataset

ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 119 bp overlap

ZNF320 1 dataset

Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap

ZNF75A 1 dataset

Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap