chr3 : 133,283,969 – 133,284,628
659 bp 55 TFs 0 linked genes
This 659 bp open chromatin element has no linked target genes and is bound by 55 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:133,278,969 – 133,289,628
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 169 bp overlap
ARNTL 1 dataset
ChIP U2OS_DMSO GSE85096.ARNTL.U2OS_DMSO 239 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 410 bp overlap
BRD4 1 dataset
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 194 bp overlap
CBX3 1 dataset
ChIP T-47D-MTVL GSE64467.CBX3.T-47D-MTVL 56 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 123 bp overlap
CTCF 133 datasets
ChIP A-549 ENCSR000AUF.CTCF.A-549 230 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 239 bp overlap
ChIP AG04450 ENCFF116DJL 297 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 309 bp overlap
ChIP BE2C ENCFF757SRF 317 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 402 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 151 bp overlap
Motif DE_60h DE_60h-CTCF_MA1929.2 31 bp overlap
ChIP DOHH2 ENCFF637WNW 507 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 380 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 180 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 192 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 210 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 207 bp overlap
ChIP GM06990 ENCFF471OQT 297 bp overlap
ChIP GM06990 ENCFF471OQT 199 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 175 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 160 bp overlap
ChIP GM12864 ENCFF357DQE 285 bp overlap
ChIP GM12864 ENCSR000DRB.CTCF.GM12864 111 bp overlap
ChIP GM12865 ENCFF067GFI 257 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 141 bp overlap
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 114 bp overlap
ChIP GM12868 ENCSR000DRI.CTCF.GM12868 128 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 145 bp overlap
ChIP GM12870 ENCSR000DRK.CTCF.GM12870 108 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 250 bp overlap
ChIP GM12872 ENCFF697BYI 285 bp overlap
ChIP GM12873 ENCFF711LOS 285 bp overlap
ChIP GM12873 ENCSR000DRP.CTCF.GM12873 176 bp overlap
ChIP GM12878 ENCFF511URZ 205 bp overlap
ChIP GM12878 ENCSR000DKV.CTCF.GM12878 145 bp overlap
ChIP GM23338 ENCFF531QOI 142 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 138 bp overlap
ChIP H9 ENCFF152GTF 328 bp overlap
ChIP H9 ENCFF152GTF 253 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 262 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 249 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 313 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 167 bp overlap
ChIP HCT116 ENCFF003KHP 421 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 172 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 321 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 340 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 162 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 127 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 415 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 294 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 161 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 143 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 111 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 110 bp overlap
ChIP K-562_12040 GSE131349.CTCF.K-562_12040 102 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 100 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 103 bp overlap
ChIP K-562_14376 GSE131349.CTCF.K-562_14376 109 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 109 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 151 bp overlap
ChIP K-562_8005 GSE131349.CTCF.K-562_8005 185 bp overlap
ChIP K562 ENCFF082GOI 185 bp overlap
ChIP K562 ENCFF430KTH 425 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 251 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 384 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 133 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 189 bp overlap
ChIP Loucy ENCFF359TVQ 441 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 367 bp overlap
ChIP MCF-7_HYPOXIA GSE78113.CTCF.MCF-7_HYPOXIA 252 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 436 bp overlap
ChIP MDA-MB-435_Asynchronous GSE102019.CTCF.MDA-MB-435_Asynchronous 296 bp overlap
ChIP NB4 ENCFF155DNY 251 bp overlap
ChIP NB4 ENCSR000DWN.CTCF.NB4 133 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 202 bp overlap
ChIP OCI-LY1 ENCFF455ESK 419 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 411 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 467 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 293 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 399 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 386 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 245 bp overlap
ChIP PANC-1 ENCSR203QEB.CTCF.PANC-1 397 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 217 bp overlap
ChIP Panc1 ENCFF056JQX 535 bp overlap
ChIP Panc1 ENCFF056JQX 335 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 116 bp overlap
ChIP SK-N-SH ENCFF575DMG 441 bp overlap
ChIP SK-N-SH ENCFF731NJX 251 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 411 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 144 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 132 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 112 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 495 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 349 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 183 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 128 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 271 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 231 bp overlap
ChIP astrocyte of the spinal cord ENCFF213GKL 261 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 171 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 137 bp overlap
ChIP endodermal cell ENCFF471YCZ 432 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 330 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 411 bp overlap
ChIP hESC GSE20650.CTCF.hESC 128 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 242 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 337 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 373 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 229 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 444 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 194 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 237 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 137 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 219 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 182 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 247 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 200 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 173 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 280 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 268 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 446 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 178 bp overlap
ChIP medulloblastoma ENCSR000DMY.CTCF.medulloblastoma 104 bp overlap
ChIP neural progenitor cell ENCFF420RBO 185 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 454 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 109 bp overlap
ChIP pancreas ENCSR000DND.CTCF.pancreas 88 bp overlap
ChIP plasmablast GSE142493.CTCF.plasmablast 135 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 204 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 427 bp overlap
ChIP skeletal muscle myoblast ENCFF813BQI 291 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 125 bp overlap
EZH2 4 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 139 bp overlap
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 109 bp overlap
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 145 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 629 bp overlap
FIGLA 1 dataset
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 276 bp overlap
GLI3 1 dataset
Motif DE_60h DE_60h-GLI3_MA1491.3 15 bp overlap
GRHL1 1 dataset
Motif DE_60h DE_60h-GRHL1_MA0647.2 10 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 177 bp overlap
MAX 1 dataset
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 122 bp overlap
MED26 1 dataset
ChIP U2OS_SHCTR GSE73742.MED26.U2OS_SHCTR 241 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 50 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 287 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 133 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 182 bp overlap
NCAPH2 2 datasets
ChIP IMR-90_Triptolide-30min GSE118494.NCAPH2.IMR-90_Triptolide-30min 308 bp overlap
ChIP IMR-90_alpha-amanitin-1H GSE118494.NCAPH2.IMR-90_alpha-amanitin-1H 264 bp overlap
PHF19 1 dataset
ChIP DU145_SH4 GSE135623.PHF19.DU145_SH4 223 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 248 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 148 bp overlap
Pgr 1 dataset
Motif DE_60h DE_60h-Pgr_MA2323.1 17 bp overlap
Prdm4 1 dataset
Motif DE_60h DE_60h-Prdm4_MA1647.3 11 bp overlap
RAD21 25 datasets
ChIP GM12878 ENCFF046CBW 265 bp overlap
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 130 bp overlap
ChIP GM12878 ENCSR000EAC.RAD21.GM12878 125 bp overlap
ChIP H1 ENCFF698EWO 153 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 313 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 205 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 141 bp overlap
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 209 bp overlap
ChIP HUVEC-C_normoxia GSE94872.RAD21.HUVEC-C_normoxia 258 bp overlap
ChIP IMR-5 GSE78957.RAD21.IMR-5 101 bp overlap
ChIP Ishikawa ENCFF570JVV 225 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 116 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 118 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 221 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 293 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 188 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 178 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 278 bp overlap
ChIP hiPSC_IB7 GSE106870.RAD21.hiPSC_IB7 173 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 291 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 288 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 264 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 139 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 343 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 128 bp overlap
REST 1 dataset
Motif DE_60h DE_60h-REST_MA0138.3 20 bp overlap
RFX4 1 dataset
Motif DE_60h DE_60h-RFX4_MA0799.3 13 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_WT GSE138496.SMAD2-3.HGrC1_WT 176 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 148 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 440 bp overlap
SMC3 4 datasets
ChIP GP5D GSE51234.SMC3.GP5D 244 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 152 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 187 bp overlap
ChIP SK-N-SH ENCSR000EHW.SMC3.SK-N-SH 124 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 308 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 160 bp overlap
SP5 1 dataset
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
STAG2 1 dataset
ChIP HCAEC GSE101921.STAG2.HCAEC 183 bp overlap
TBX18 1 dataset
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 92 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 215 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 244 bp overlap
TFCP2 1 dataset
Motif DE_60h DE_60h-TFCP2_MA1968.2 9 bp overlap
THRA 1 dataset
Motif DE_60h DE_60h-THRA_MA1969.2 18 bp overlap
YY1 9 datasets
ChIP H1 ENCFF524BTL 190 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 351 bp overlap
ChIP K-562 ENCSR000EWF.YY1.K-562 141 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 354 bp overlap
ChIP NT2/D1 ENCFF999MII 301 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 188 bp overlap
ChIP SK-N-SH ENCSR000BSM.YY1.SK-N-SH 166 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 295 bp overlap
ChIP WA01 GSE39096.YY1.WA01 171 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 104 bp overlap
ZEB1 1 dataset
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 96 bp overlap
ZNF317 1 dataset
Motif DE_60h DE_60h-ZNF317_MA1593.2 8 bp overlap
ZNF320 1 dataset
Motif DE_60h DE_60h-ZNF320_MA1976.2 20 bp overlap
ZNF460 1 dataset
Motif DE_60h DE_60h-ZNF460_MA1596.1 16 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 182 bp overlap
ZNF680 1 dataset
Motif DE_60h DE_60h-ZNF680_MA1729.2 11 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 181 bp overlap
ZSCAN21 1 dataset
Motif DE_60h DE_60h-ZSCAN21_MA2336.1 7 bp overlap
Zfp335 1 dataset
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
Zfx 1 dataset
Motif DE_60h DE_60h-Zfx_MA0146.3 10 bp overlap
Znf423 1 dataset
Motif DE_60h DE_60h-Znf423_MA0116.1 15 bp overlap
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