chr3 : 130,138,406 – 130,139,375
969 bp 92 TFs 0 linked genes
This 969 bp open chromatin element has no linked target genes and is bound by 92 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:130,133,406 – 130,144,375
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
92 transcription factors
Source
Cell type
Arid3a 1 dataset
Motif DE_24h DE_24h-Arid3a_MA0151.1 6 bp overlap
BCL11A 1 dataset
Motif DE_24h DE_24h-BCL11A_MA2324.1 7 bp overlap
CDX1 1 dataset
Motif DE_24h DE_24h-CDX1_MA0878.3 10 bp overlap
CDX2 2 datasets
Motif DE_24h DE_24h-CDX2_MA0465.3 8 bp overlap
Motif DE_36h DE_36h-CDX2_MA0465.3 8 bp overlap
CTCF 1 dataset
ChIP endodermal cell ENCFF471YCZ 415 bp overlap
E2F2 1 dataset
Motif DE_24h DE_24h-E2F2_MA0864.3 13 bp overlap
E2F4 1 dataset
Motif DE_24h DE_24h-E2F4_MA0470.3 13 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 402 bp overlap
ETV2 1 dataset
Motif DE_24h DE_24h-ETV2_MA0762.2 9 bp overlap
ETV5::FOXO1 1 dataset
Motif DE_24h DE_24h-ETV5FOXO1_MA1947.2 10 bp overlap
FEZF2 1 dataset
Motif DE_24h DE_24h-FEZF2_MA2341.1 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 673 bp overlap
ChIP DE DE-FOXA2-2 857 bp overlap
FOXA3 1 dataset
ChIP K562 ENCFF781VSC 313 bp overlap
FOXH1 2 datasets
Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap
Motif DE_24h DE_24h-FOXH1_MA0479.2 8 bp overlap
FOXK2 1 dataset
ChIP K562 ENCFF851PFH 332 bp overlap
Foxq1 1 dataset
Motif DE_24h DE_24h-Foxq1_MA0040.2 10 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 424 bp overlap
ChIP DE DE-GATA4-2 244 bp overlap
ChIP DE DE-GATA4-2 471 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 402 bp overlap
ChIP DE DE-GATA6-2 896 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 487 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 595 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 600 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 463 bp overlap
GRHL1 1 dataset
Motif DE_24h DE_24h-GRHL1_MA0647.2 10 bp overlap
HOXB4 1 dataset
Motif DE_24h DE_24h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_24h DE_24h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_24h DE_24h-HOXD4_MA1507.2 6 bp overlap
Hmga1 1 dataset
Motif DE_24h DE_24h-Hmga1_MA2124.1 8 bp overlap
Hnf1A 1 dataset
Motif DE_24h DE_24h-Hnf1A_MA1991.2 10 bp overlap
Hoxa13 1 dataset
Motif DE_24h DE_24h-Hoxa13_MA0650.4 8 bp overlap
IKZF1 2 datasets
Motif DE_24h DE_24h-IKZF1_MA1508.2 8 bp overlap
Motif DE_24h DE_24h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
Irf1 1 dataset
Motif DE_24h DE_24h-Irf1_MA0050.4 11 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 503 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 331 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 708 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 599 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 275 bp overlap
JUND 1 dataset
Motif DE_24h DE_24h-JUND_MA0492.2 11 bp overlap
MEIS1 2 datasets
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
Msgn1 1 dataset
Motif DE_24h DE_24h-Msgn1_MA1524.3 10 bp overlap
NFE2 2 datasets
ChIP K562 ENCFF047YKA 381 bp overlap
ChIP K562 ENCFF163BSI 265 bp overlap
NFIA 1 dataset
Motif DE_24h DE_24h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_24h DE_24h-NFIX_MA0671.2 6 bp overlap
NR1H4::RXRA 3 datasets
Motif DE_12h DE_12h-NR1H4RXRA_MA1146.2 13 bp overlap
Motif DE_24h DE_24h-NR1H4RXRA_MA1146.2 13 bp overlap
Motif DE_36h DE_36h-NR1H4RXRA_MA1146.2 13 bp overlap
NR1I3 1 dataset
Motif DE_24h DE_24h-NR1I3_MA1534.2 8 bp overlap
NR2C2 2 datasets
Motif DE_24h DE_24h-NR2C2_MA0504.2 14 bp overlap
Motif DE_36h DE_36h-NR2C2_MA0504.2 14 bp overlap
NR2F6 3 datasets
Motif DE_12h DE_12h-NR2F6_MA1539.1 15 bp overlap
Motif DE_24h DE_24h-NR2F6_MA1539.1 15 bp overlap
Motif DE_36h DE_36h-NR2F6_MA1539.1 15 bp overlap
NR4A2::RXRA 3 datasets
Motif DE_12h DE_12h-NR4A2RXRA_MA1147.2 13 bp overlap
Motif DE_24h DE_24h-NR4A2RXRA_MA1147.2 13 bp overlap
Motif DE_36h DE_36h-NR4A2RXRA_MA1147.2 13 bp overlap
NR6A1 1 dataset
Motif DE_24h DE_24h-NR6A1_MA1541.2 14 bp overlap
PBX3 1 dataset
Motif DE_24h DE_24h-PBX3_MA1114.2 11 bp overlap
PHOX2A 1 dataset
Motif DE_24h DE_24h-PHOX2A_MA0713.1 11 bp overlap
PKNOX1 1 dataset
Motif DE_24h DE_24h-PKNOX1_MA0782.3 10 bp overlap
POU1F1 1 dataset
Motif DE_24h DE_24h-POU1F1_MA0784.3 14 bp overlap
POU2F1::SOX2 1 dataset
Motif DE_24h DE_24h-POU2F1SOX2_MA1962.1 17 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 639 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 526 bp overlap
POU6F2 1 dataset
Motif DE_24h DE_24h-POU6F2_MA0793.2 9 bp overlap
PRDM1 2 datasets
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
Motif DE_24h DE_24h-PRDM1_MA0508.4 7 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_24h DE_24h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_24h DE_24h-Pou5f1Sox2_MA0142.1 15 bp overlap
RBPJ 1 dataset
Motif DE_24h DE_24h-RBPJ_MA1116.2 6 bp overlap
REL 1 dataset
Motif DE_24h DE_24h-REL_MA0101.1 10 bp overlap
RELA 1 dataset
Motif DE_24h DE_24h-RELA_MA0107.1 10 bp overlap
Rarb 2 datasets
Motif DE_24h DE_24h-Rarb_MA0858.1 17 bp overlap
Motif DE_36h DE_36h-Rarb_MA0858.1 17 bp overlap
SATB1 2 datasets
Motif DE_24h DE_24h-SATB1_MA1963.2 7 bp overlap
Motif DE_24h DE_24h-SATB1_MA1963.2 7 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 614 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 796 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 816 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 969 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 711 bp overlap
SOX13 1 dataset
Motif DE_24h DE_24h-SOX13_MA1120.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 396 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 437 bp overlap
SOX2 1 dataset
Motif DE_24h DE_24h-SOX2_MA0143.5 7 bp overlap
SOX21 2 datasets
Motif DE_24h DE_24h-SOX21_MA0866.1 15 bp overlap
Motif DE_24h DE_24h-SOX21_MA0866.1 15 bp overlap
Six3 1 dataset
Motif DE_24h DE_24h-Six3_MA0631.2 11 bp overlap
Sox1 1 dataset
Motif DE_24h DE_24h-Sox1_MA0870.1 15 bp overlap
Sox17 1 dataset
Motif DE_24h DE_24h-Sox17_MA0078.3 10 bp overlap
Sox3 1 dataset
Motif DE_24h DE_24h-Sox3_MA0514.3 7 bp overlap
Sox5 1 dataset
Motif DE_24h DE_24h-Sox5_MA0087.3 8 bp overlap
Sox7 1 dataset
Motif DE_24h DE_24h-Sox7_MA2095.1 10 bp overlap
Spi1 1 dataset
Motif DE_24h DE_24h-Spi1_MA0080.7 13 bp overlap
Stat2 2 datasets
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
Motif DE_24h DE_24h-Stat2_MA1623.2 10 bp overlap
Stat4 2 datasets
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
Motif DE_24h DE_24h-Stat4_MA0518.2 10 bp overlap
TBX5 3 datasets
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
TFAP2A 3 datasets
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
Motif DE_24h DE_24h-TFAP2A_MA0810.2 11 bp overlap
Motif DE_36h DE_36h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 3 datasets
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_24h DE_24h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_36h DE_36h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 3 datasets
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
Motif DE_24h DE_24h-TFAP2C_MA0524.3 11 bp overlap
Motif DE_36h DE_36h-TFAP2C_MA0524.3 11 bp overlap
TFCP2 1 dataset
Motif DE_24h DE_24h-TFCP2_MA1968.2 9 bp overlap
TGIF1 1 dataset
Motif DE_24h DE_24h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_24h DE_24h-TGIF2_MA0797.1 12 bp overlap
TGIF2LX 1 dataset
Motif DE_24h DE_24h-TGIF2LX_MA1571.1 12 bp overlap
TGIF2LY 1 dataset
Motif DE_24h DE_24h-TGIF2LY_MA1572.1 12 bp overlap
Tbx6 2 datasets
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
ZIM3 2 datasets
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
Motif DE_24h DE_24h-ZIM3_MA1709.2 11 bp overlap
ZNF274 2 datasets
Motif DE_12h DE_12h-ZNF274_MA1592.2 12 bp overlap
Motif DE_24h DE_24h-ZNF274_MA1592.2 12 bp overlap
ZNF320 1 dataset
Motif DE_24h DE_24h-ZNF320_MA1976.2 20 bp overlap
ZNF354A 1 dataset
Motif DE_24h DE_24h-ZNF354A_MA1978.2 20 bp overlap
ZNF354C 2 datasets
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_24h DE_24h-ZNF354C_MA0130.1 6 bp overlap
ZNF547 1 dataset
Motif DE_24h DE_24h-ZNF547_MA2334.1 13 bp overlap
ZNF558 1 dataset
Motif DE_24h DE_24h-ZNF558_MA2335.1 29 bp overlap
ZNF707 1 dataset
Motif DE_24h DE_24h-ZNF707_MA1715.1 15 bp overlap
ZNF766 1 dataset
Motif DE_24h DE_24h-ZNF766_MA2098.1 9 bp overlap
ZNF784 2 datasets
Motif DE_24h DE_24h-ZNF784_MA1717.2 8 bp overlap
Motif DE_36h DE_36h-ZNF784_MA1717.2 8 bp overlap
Zfp961 3 datasets
Motif DE_12h DE_12h-Zfp961_MA2126.1 8 bp overlap
Motif DE_24h DE_24h-Zfp961_MA2126.1 8 bp overlap
Motif DE_36h DE_36h-Zfp961_MA2126.1 8 bp overlap
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