chr3 : 129,610,197 129,610,485
288 bp 44 TFs 1 linked gene
This 288 bp open chromatin element is linked to PLXND1 and is bound by 44 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PLXND1 3.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:129,605,197 – 129,615,485
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
44 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP MCF-7 GSE144036.AFF4.MCF-7 273 bp overlap
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 196 bp overlap
BRD3 1 dataset
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 195 bp overlap
BRD4 3 datasets
ChIP HUVEC-C GSE53998.BRD4.HUVEC-C 288 bp overlap
ChIP HUVEC-C_modETS1 GSE93030.BRD4.HUVEC-C_modETS1 281 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 288 bp overlap
CHD4 1 dataset
ChIP A-549 ENCSR550SCU.CHD4.A-549 161 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 252 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 180 bp overlap
ERG 3 datasets
ChIP HUVEC-C GSE124891.ERG.HUVEC-C 177 bp overlap
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 154 bp overlap
ChIP aortic-endothelial-cell_D39 GSE139377.ERG.aortic-endothelial-cell_D39 187 bp overlap
ESR1 3 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 166 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 248 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 217 bp overlap
ETS1 7 datasets
ChIP HUVEC-C_12h GSE93030.ETS1.HUVEC-C_12h 83 bp overlap
ChIP HUVEC-C_4h GSE93030.ETS1.HUVEC-C_4h 288 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 108 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.ETS1.HUVEC-C_VEGF_12h 83 bp overlap
ChIP HUVEC-C_VEGF_1H GSE41166.ETS1.HUVEC-C_VEGF_1H 288 bp overlap
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 288 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.ETS1.HUVEC-C_VEGF_4h 288 bp overlap
FLI1 1 dataset
ChIP HUVEC-C_VEGF_1h GSE109625.FLI1.HUVEC-C_VEGF_1h 66 bp overlap
GATA2 1 dataset
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 134 bp overlap
GATA6 3 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 288 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 102 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 91 bp overlap
IKZF1 1 dataset
ChIP BCR-ABL1_LAX2 GSE58825.IKZF1.BCR-ABL1_LAX2 93 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 188 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 219 bp overlap
JUN 1 dataset
ChIP 786-O GSE86092.JUN.786-O 144 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 175 bp overlap
MED1 3 datasets
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 288 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 288 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 86 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 238 bp overlap
MYC 1 dataset
ChIP endothelial_umbilical-vein ENCSR000DLU.MYC.endothelial_umbilical-vein 62 bp overlap
NR3C1 1 dataset
ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 153 bp overlap
OVOL1 1 dataset
ChIP MCF-7 ENCFF537GWI 54 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 117 bp overlap
POU5F1 1 dataset
ChIP SKM-1 GSE93706.POU5F1.SKM-1 213 bp overlap
RELA 2 datasets
ChIP 786-O GSE86092.RELA.786-O 50 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 78 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 53 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 288 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 270 bp overlap
SMARCA4 5 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 154 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 288 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 254 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 83 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 233 bp overlap
SMARCC1 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 129 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 166 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 125 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 151 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 73 bp overlap
SS18 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 78 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 288 bp overlap
STAG1 1 dataset
ChIP HCAEC GSE101921.STAG1.HCAEC 64 bp overlap
TCF7L2 7 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 82 bp overlap
ChIP HeLa-S3 ENCFF084KRL 85 bp overlap
ChIP HeLa-S3 ENCFF084KRL 288 bp overlap
ChIP HeLa-S3 ENCFF673QAB 119 bp overlap
ChIP HeLa-S3 ENCSR000EVE.TCF7L2.HeLa-S3 56 bp overlap
ChIP PANC-1 ENCSR000EXL.TCF7L2.PANC-1 288 bp overlap
ChIP Panc1 ENCFF829HHL 100 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 227 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 253 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 244 bp overlap
ZBTB7A 3 datasets
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 288 bp overlap
ChIP Hep-G2 ENCSR000BQA.ZBTB7A.Hep-G2 93 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 76 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 142 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCFF835SGA 95 bp overlap