chr3 : 117,977,522 – 117,978,122
600 bp 72 TFs 0 linked genes
This 600 bp open chromatin element has no linked target genes and is bound by 72 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:117,972,522 – 117,983,122
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
72 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP NGP GSE134626.ARID1A.NGP 397 bp overlap
ARID5B 1 dataset
ChIP Jurkat GSE97512.ARID5B.Jurkat 406 bp overlap
BRD4 3 datasets
ChIP Jurkat GSE83777.BRD4.Jurkat 600 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 600 bp overlap
ChIP MOLT-4_DMSO GSE79288.BRD4.MOLT-4_DMSO 546 bp overlap
CDK7 1 dataset
ChIP Jurkat GSE83777.CDK7.Jurkat 600 bp overlap
CDK9 2 datasets
ChIP MOLT-4_DMSO GSE79288.CDK9.MOLT-4_DMSO 567 bp overlap
ChIP MOLT-4_JQ1 GSE79288.CDK9.MOLT-4_JQ1 600 bp overlap
CTCFL 1 dataset
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 203 bp overlap
DMRTA2 1 dataset
Motif DE_48h DE_48h-DMRTA2_MA1478.2 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 289 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 313 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 310 bp overlap
ERF::FOXO1 2 datasets
Motif DE_48h DE_48h-ERFFOXO1_MA1936.2 12 bp overlap
Motif DE_60h DE_60h-ERFFOXO1_MA1936.2 12 bp overlap
ERG 2 datasets
ChIP Jurkat GSE49091.ERG.Jurkat 447 bp overlap
ChIP VCaP GSE49091.ERG.VCaP 145 bp overlap
ETV5::FOXI1 2 datasets
Motif DE_48h DE_48h-ETV5FOXI1_MA1946.2 12 bp overlap
Motif DE_60h DE_60h-ETV5FOXI1_MA1946.2 12 bp overlap
EZH2 2 datasets
ChIP Jurkat GSE147198.EZH2.Jurkat 286 bp overlap
ChIP Jurkat_KO GSE147198.EZH2.Jurkat_KO 205 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 329 bp overlap
ChIP DE DE-FOXA2-2 371 bp overlap
FOXN3 2 datasets
Motif DE_48h DE_48h-FOXN3_MA1489.1 8 bp overlap
Motif DE_60h DE_60h-FOXN3_MA1489.1 8 bp overlap
FOXO1::ELK1 2 datasets
Motif DE_48h DE_48h-FOXO1ELK1_MA1954.2 13 bp overlap
Motif DE_60h DE_60h-FOXO1ELK1_MA1954.2 13 bp overlap
Foxq1 1 dataset
Motif DE_48h DE_48h-Foxq1_MA0040.2 10 bp overlap
GATA1::TAL1 1 dataset
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 3 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 361 bp overlap
ChIP SK-N-SH ENCFF764OZD 314 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 242 bp overlap
GATA3 10 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 262 bp overlap
ChIP Jurkat GSE76181.GATA3.Jurkat 528 bp overlap
ChIP Jurkat GSE68976.GATA3.Jurkat 513 bp overlap
ChIP Jurkat GSE29180.GATA3.Jurkat 371 bp overlap
ChIP Jurkat GSE120063.GATA3.Jurkat 355 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 174 bp overlap
ChIP SH-SY5Y ENCFF475HYF 307 bp overlap
ChIP SH-SY5Y ENCFF475HYF 91 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 385 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 175 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 399 bp overlap
ChIP DE DE-GATA4-2 540 bp overlap
ChIP foregut GSE117136.GATA4.foregut 432 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 253 bp overlap
GATA5 3 datasets
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 19 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 113 bp overlap
ChIP DE DE-GATA6-1 585 bp overlap
ChIP DE DE-GATA6-2 600 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 600 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 507 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 505 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 428 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 600 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 600 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 449 bp overlap
ChIP foregut GSE117136.GATA6.foregut 332 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 356 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 325 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 135 bp overlap
Gata3 5 datasets
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
Gfi1B 1 dataset
Motif DE_48h DE_48h-Gfi1B_MA0483.2 10 bp overlap
HAND2 4 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 426 bp overlap
Motif DE_48h DE_48h-HAND2_MA1638.2 6 bp overlap
Motif DE_60h DE_60h-HAND2_MA1638.2 6 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 221 bp overlap
HMBOX1 1 dataset
Motif DE_48h DE_48h-HMBOX1_MA0895.2 7 bp overlap
HSF1 1 dataset
ChIP MO91_CHX_10UM GSE45852.HSF1.MO91_CHX_10UM 175 bp overlap
Hnf1A 2 datasets
Motif DE_48h DE_48h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_60h DE_60h-Hnf1A_MA1991.2 10 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 258 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 492 bp overlap
MAML3 1 dataset
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 232 bp overlap
MEIS1 2 datasets
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MYB 3 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 600 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 499 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 582 bp overlap
NEUROG2 2 datasets
Motif DE_48h DE_48h-NEUROG2_MA1642.2 7 bp overlap
Motif DE_60h DE_60h-NEUROG2_MA1642.2 7 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 102 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 297 bp overlap
PKNOX2 2 datasets
Motif DE_48h DE_48h-PKNOX2_MA0783.1 12 bp overlap
Motif DE_60h DE_60h-PKNOX2_MA0783.1 12 bp overlap
Ptf1A 2 datasets
Motif DE_48h DE_48h-Ptf1A_MA1618.2 9 bp overlap
Motif DE_60h DE_60h-Ptf1A_MA1618.2 9 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 365 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 278 bp overlap
RUNX1 2 datasets
ChIP Jurkat GSE68976.RUNX1.Jurkat 512 bp overlap
ChIP Jurkat GSE76181.RUNX1.Jurkat 485 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 378 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 507 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 407 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 331 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 370 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 334 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 309 bp overlap
SMARCA4 3 datasets
ChIP NGP GSE134626.SMARCA4.NGP 315 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 176 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 339 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 200 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 315 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 225 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 212 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 148 bp overlap
TAL1 2 datasets
ChIP Jurkat GSE29180.TAL1.Jurkat 158 bp overlap
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 600 bp overlap
TAL1::TCF3 2 datasets
Motif DE_48h DE_48h-TAL1TCF3_MA0091.2 10 bp overlap
Motif DE_60h DE_60h-TAL1TCF3_MA0091.2 10 bp overlap
TBX1 2 datasets
Motif DE_48h DE_48h-TBX1_MA0805.1 8 bp overlap
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
TBX15 2 datasets
Motif DE_48h DE_48h-TBX15_MA0803.1 8 bp overlap
Motif DE_60h DE_60h-TBX15_MA0803.1 8 bp overlap
TBX18 2 datasets
Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
TBX19 2 datasets
Motif DE_48h DE_48h-TBX19_MA0804.2 17 bp overlap
Motif DE_60h DE_60h-TBX19_MA0804.2 17 bp overlap
TBX2 2 datasets
Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap
Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap
TBX3 2 datasets
Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap
Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap
TBX4 2 datasets
Motif DE_48h DE_48h-TBX4_MA0806.1 8 bp overlap
Motif DE_60h DE_60h-TBX4_MA0806.1 8 bp overlap
TBX5 2 datasets
Motif DE_48h DE_48h-TBX5_MA0807.1 8 bp overlap
Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap
TBXT 2 datasets
Motif DE_48h DE_48h-TBXT_MA0009.2 16 bp overlap
Motif DE_60h DE_60h-TBXT_MA0009.2 16 bp overlap
TCF7L1 2 datasets
Motif DE_48h DE_48h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_60h DE_60h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 2 datasets
Motif DE_48h DE_48h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_60h DE_60h-TCF7L2_MA0523.2 9 bp overlap
TFAP4::FLI1 1 dataset
Motif DE_48h DE_48h-TFAP4FLI1_MA1967.2 14 bp overlap
TGIF1 2 datasets
Motif DE_48h DE_48h-TGIF1_MA0796.1 12 bp overlap
Motif DE_60h DE_60h-TGIF1_MA0796.1 12 bp overlap
TGIF2 2 datasets
Motif DE_48h DE_48h-TGIF2_MA0797.1 12 bp overlap
Motif DE_60h DE_60h-TGIF2_MA0797.1 12 bp overlap
TRPS1 5 datasets
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
TWIST1 2 datasets
Motif DE_48h DE_48h-TWIST1_MA1123.3 8 bp overlap
Motif DE_60h DE_60h-TWIST1_MA1123.3 8 bp overlap
ZBTB18 2 datasets
Motif DE_48h DE_48h-ZBTB18_MA0698.2 11 bp overlap
Motif DE_60h DE_60h-ZBTB18_MA0698.2 11 bp overlap
ZNF354A 2 datasets
Motif DE_48h DE_48h-ZNF354A_MA1978.2 20 bp overlap
Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap
ZNF530 2 datasets
Motif DE_48h DE_48h-ZNF530_MA1981.2 14 bp overlap
Motif DE_72h DE_72h-ZNF530_MA1981.2 14 bp overlap
ZNF582 2 datasets
Motif DE_48h DE_48h-ZNF582_MA1983.2 19 bp overlap
Motif DE_72h DE_72h-ZNF582_MA1983.2 19 bp overlap
ZNF766 2 datasets
Motif DE_48h DE_48h-ZNF766_MA2098.1 9 bp overlap
ChIP HEK293T GSE78099.ZNF766.HEK293T 111 bp overlap
ZSCAN21 2 datasets
Motif DE_48h DE_48h-ZSCAN21_MA2336.1 7 bp overlap
Motif DE_60h DE_60h-ZSCAN21_MA2336.1 7 bp overlap
Zfp809 2 datasets
Motif DE_48h DE_48h-Zfp809_MA2125.1 9 bp overlap
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap
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