chr3 : 69,510,542 69,510,877
335 bp 62 TFs 0 linked genes
This 335 bp open chromatin element has no linked target genes and is bound by 62 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:69,505,542 – 69,515,877
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
62 transcription factors
Source
Cell type
AR 11 datasets
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 99 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 136 bp overlap
ChIP MCF-7 ERP001226.AR.MCF-7 105 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 75 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 257 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 99 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 111 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 97 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 145 bp overlap
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 170 bp overlap
ChIP prostate_P25 GSE130408.AR.prostate_P25 167 bp overlap
ARID1A 2 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 149 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 101 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 52 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 112 bp overlap
BARHL1 1 dataset
Motif DE_12h DE_12h-BARHL1_MA0877.4 6 bp overlap
BARHL2 1 dataset
Motif DE_12h DE_12h-BARHL2_MA0635.2 6 bp overlap
BRD2 1 dataset
ChIP SUM159PT_MGSK2801 GSE116879.BRD2.SUM159PT_MGSK2801 190 bp overlap
BRD4 9 datasets
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 247 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 179 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 210 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 292 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 335 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 235 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 164 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 156 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 335 bp overlap
CDX2 1 dataset
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 292 bp overlap
CHD4 2 datasets
ChIP 501-mel GSE134848.CHD4.501-mel 146 bp overlap
ChIP SCMC GSE155861.CHD4.SCMC 309 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 293 bp overlap
ERG 5 datasets
ChIP VCaP GSE83650.ERG.VCaP 97 bp overlap
ChIP VCaP GSE98809.ERG.VCaP 97 bp overlap
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 107 bp overlap
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 69 bp overlap
ChIP VCaP_shERG GSE110655.ERG.VCaP_shERG 64 bp overlap
ESR1 34 datasets
ChIP MCF-7 GSE68355.ESR1.MCF-7 213 bp overlap
ChIP MCF-7 GSE103023.ESR1.MCF-7 179 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 152 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 105 bp overlap
ChIP MCF-7_AZD2014 GSE103023.ESR1.MCF-7_AZD2014 121 bp overlap
ChIP MCF-7_E2 GSE59530.ESR1.MCF-7_E2 181 bp overlap
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 169 bp overlap
ChIP MCF-7_E2 ERP000901.ESR1.MCF-7_E2 132 bp overlap
ChIP MCF-7_E2-10min-ERalpha GSE94023.ESR1.MCF-7_E2-10min-ERalpha 204 bp overlap
ChIP MCF-7_E2-20min-ERalpha GSE94023.ESR1.MCF-7_E2-20min-ERalpha 125 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 119 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 151 bp overlap
ChIP MCF-7_E2-80min-ERalpha GSE94023.ESR1.MCF-7_E2-80min-ERalpha 57 bp overlap
ChIP MCF-7_E2PG GSE68356.ESR1.MCF-7_E2PG 148 bp overlap
ChIP MCF-7_E2_45min GSE109820.ESR1.MCF-7_E2_45min 59 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 94 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 178 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 126 bp overlap
ChIP MCF-7_SHCRT_E2 ERP000380.ESR1.MCF-7_SHCRT_E2 150 bp overlap
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 127 bp overlap
ChIP MCF-7_SIGATA_E2 GSE40129.ESR1.MCF-7_SIGATA_E2 116 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 209 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 195 bp overlap
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 172 bp overlap
ChIP MCF-7_jc5853 GSE126004.ESR1.MCF-7_jc5853 136 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 191 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 184 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 182 bp overlap
ChIP MDA-MB-134-VI_E2 GSE109103.ESR1.MDA-MB-134-VI_E2 93 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 91 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 161 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_1 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_1 108 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 125 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_F GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_F 237 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 148 bp overlap
ESR1_Y537N 2 datasets
ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 137 bp overlap
ChIP MCF-7_dox_E2 GSE94493.ESR1_Y537N.MCF-7_dox_E2 179 bp overlap
EZH2 1 dataset
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 187 bp overlap
FOXA1 7 datasets
ChIP MCF-7_JC4691 GSE126004.FOXA1.MCF-7_JC4691 75 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 68 bp overlap
ChIP MCF-7_JC4694 GSE126004.FOXA1.MCF-7_JC4694 85 bp overlap
ChIP MCF-7_JC4695 GSE126004.FOXA1.MCF-7_JC4695 58 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 63 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 59 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 63 bp overlap
FOXA2 1 dataset
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 176 bp overlap
FOXL2 1 dataset
ChIP KGN_1512 GSE138496.FOXL2.KGN_1512 174 bp overlap
GATA2 1 dataset
ChIP ESF GSE108408.GATA2.ESF 171 bp overlap
GATA3 1 dataset
ChIP MCF-7 GSE122847.GATA3.MCF-7 70 bp overlap
ISL2 1 dataset
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 266 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 258 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 257 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 335 bp overlap
JUNB 1 dataset
ChIP HAEC GSE89970.JUNB.HAEC 109 bp overlap
MGA 1 dataset
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 205 bp overlap
NCOR1 1 dataset
ChIP LS180_125 GSE39277.NCOR1.LS180_125 52 bp overlap
NR2F2 2 datasets
ChIP liver ENCSR168SMX.NR2F2.liver 98 bp overlap
ChIP uterus_STROMA_ENDOMETRIUM GSE52008.NR2F2.uterus_STROMA_ENDOMETRIUM 129 bp overlap
NR3C1 1 dataset
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 167 bp overlap
NR4A1 2 datasets
ChIP Kasumi-1 GSE79491.NR4A1.Kasumi-1 167 bp overlap
ChIP MOLM-14_DHE GSE124963.NR4A1.MOLM-14_DHE 137 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 126 bp overlap
PGR 2 datasets
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 74 bp overlap
ChIP leiomyoma_RU486 GSE40724.PGR.leiomyoma_RU486 149 bp overlap
POLR2A 1 dataset
ChIP prostate gland ENCFF881OMH 256 bp overlap
PPARG 1 dataset
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 163 bp overlap
RXR 1 dataset
ChIP macrophage ERP008801.RXR.macrophage 78 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 131 bp overlap
SMAD4 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.SMAD4.HGrC1_C134W-TGF 286 bp overlap
SMARCA4 3 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 235 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 286 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 195 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 82 bp overlap
SPI1 17 datasets
ChIP BDMC_donorG GSE128834.SPI1.BDMC_donorG 98 bp overlap
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 72 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 147 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 124 bp overlap
ChIP DC_LPS GSE123347.SPI1.DC_LPS 90 bp overlap
ChIP HL-60 ENCFF645GBT 158 bp overlap
ChIP KG-1 GSE128834.SPI1.KG-1 159 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 154 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 52 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 113 bp overlap
ChIP macrophage_D7_donorP GSE128834.SPI1.macrophage_D7_donorP 118 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 107 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 116 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 63 bp overlap
ChIP primary-monocyte_4h_donorO GSE128834.SPI1.primary-monocyte_4h_donorO 111 bp overlap
ChIP primary-monocyte_LPS-4h_donorO GSE128834.SPI1.primary-monocyte_LPS-4h_donorO 96 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 74 bp overlap
SREBF1 1 dataset
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
STAT3 4 datasets
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 54 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 164 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 189 bp overlap
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 221 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 210 bp overlap
TBX1 1 dataset
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
TBX4 1 dataset
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
TCF7L2 3 datasets
ChIP CD34_PROG_BIO GSE29194.TCF7L2.CD34_PROG_BIO 97 bp overlap
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 204 bp overlap
TP63 4 datasets
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 203 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 168 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 194 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 159 bp overlap
ZNF157 1 dataset
Motif DE_12h DE_12h-ZNF157_MA2331.1 21 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap