chr3 : 58,441,570 58,442,309
739 bp 65 TFs 4 linked genes
This 739 bp open chromatin element is linked to 4 target genes and is bound by 65 transcription factors.
Linked Genes
4 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
PDHB 7.7 kb Proximal Proximity
KCTD6 50.1 kb Distal Multiome
PXK 109.1 kb Distal Multiome
ABHD6 204.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:58,436,570 – 58,447,309
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 491 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 306 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 76 bp overlap
BRD3 2 datasets
ChIP H-1_DE GSE126661.BRD3.H-1_DE 151 bp overlap
ChIP H-1_DE GSE126661.BRD3.H-1_DE 145 bp overlap
CTCF 1 dataset
ChIP endodermal cell ENCFF471YCZ 301 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 136 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 657 bp overlap
ChIP DE DE-FOXA2-2 538 bp overlap
Motif DE_24h DE_24h-FOXA2_MA0047.4 8 bp overlap
FOXA3 1 dataset
Motif DE_24h DE_24h-FOXA3_MA1683.2 7 bp overlap
FOXB1 1 dataset
Motif DE_24h DE_24h-FOXB1_MA0845.1 11 bp overlap
FOXI1 1 dataset
Motif DE_24h DE_24h-FOXI1_MA0042.2 7 bp overlap
FOXP1 1 dataset
Motif DE_24h DE_24h-FOXP1_MA0481.4 7 bp overlap
FOXP4 1 dataset
Motif DE_24h DE_24h-FOXP4_MA2117.1 7 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 458 bp overlap
ChIP DE DE-GATA4-2 500 bp overlap
Motif DE_24h DE_24h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 456 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 358 bp overlap
GATA5 1 dataset
Motif DE_24h DE_24h-GATA5_MA0766.3 8 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 422 bp overlap
ChIP DE DE-GATA6-2 585 bp overlap
Motif DE_24h DE_24h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 661 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 729 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 677 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 625 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 739 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 739 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 389 bp overlap
ChIP foregut GSE117136.GATA6.foregut 272 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 241 bp overlap
Gata3 1 dataset
Motif DE_24h DE_24h-Gata3_MA0037.5 8 bp overlap
HMBOX1 2 datasets
Motif DE_24h DE_24h-HMBOX1_MA0895.2 7 bp overlap
Motif DE_48h DE_48h-HMBOX1_MA0895.2 7 bp overlap
IKZF1 1 dataset
Motif DE_24h DE_24h-IKZF1_MA1508.2 8 bp overlap
IRF4 1 dataset
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 85 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 557 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 478 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 521 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 660 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 378 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 631 bp overlap
Lef1 1 dataset
Motif DE_24h DE_24h-Lef1_MA0768.3 8 bp overlap
MAFG 2 datasets
ChIP K-562 ENCSR818DQV.MAFG.K-562 358 bp overlap
ChIP K562 ENCFF455EEO 445 bp overlap
MAFK 1 dataset
ChIP HepG2 ENCFF767LDG 257 bp overlap
MEIS1 2 datasets
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 396 bp overlap
ChIP K562 ENCFF320GSD 359 bp overlap
MITF 1 dataset
ChIP 501-mel GSE137522.MITF.501-mel 376 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 515 bp overlap
NFATC3 1 dataset
Motif DE_24h DE_24h-NFATC3_MA0625.3 6 bp overlap
NKX2-2 1 dataset
Motif DE_36h DE_36h-NKX2-2_MA1645.2 8 bp overlap
Nfat5 1 dataset
Motif DE_24h DE_24h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_24h DE_24h-Nfatc1_MA0624.3 6 bp overlap
PBX2 3 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 309 bp overlap
ChIP K562 ENCFF286KMN 268 bp overlap
ChIP K562 ENCFF286KMN 417 bp overlap
PBX3 1 dataset
Motif DE_36h DE_36h-PBX3_MA1114.2 11 bp overlap
PKNOX1 5 datasets
Motif DE_36h DE_36h-PKNOX1_MA0782.3 10 bp overlap
ChIP HEK293T ENCFF174WDB 110 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 255 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 475 bp overlap
ChIP K562 ENCFF236IUS 251 bp overlap
PKNOX2 2 datasets
Motif DE_24h DE_24h-PKNOX2_MA0783.1 12 bp overlap
Motif DE_48h DE_48h-PKNOX2_MA0783.1 12 bp overlap
POU5F1 4 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 292 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 230 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 304 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 162 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 401 bp overlap
Prdm15 1 dataset
Motif DE_24h DE_24h-Prdm15_MA1616.2 11 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 717 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 739 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 739 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 722 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 708 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 685 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 732 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 739 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 255 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 244 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 127 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 70 bp overlap
SPIB 1 dataset
Motif DE_24h DE_24h-SPIB_MA0081.3 13 bp overlap
Spi1 1 dataset
Motif DE_24h DE_24h-Spi1_MA0080.7 13 bp overlap
Stat6 1 dataset
Motif DE_24h DE_24h-Stat6_MA0520.2 10 bp overlap
TBX1 2 datasets
Motif DE_24h DE_24h-TBX1_MA0805.1 8 bp overlap
Motif DE_48h DE_48h-TBX1_MA0805.1 8 bp overlap
TBX15 2 datasets
Motif DE_24h DE_24h-TBX15_MA0803.1 8 bp overlap
Motif DE_48h DE_48h-TBX15_MA0803.1 8 bp overlap
TBX18 2 datasets
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap
TBX2 2 datasets
Motif DE_24h DE_24h-TBX2_MA0688.2 9 bp overlap
Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap
TBX21 2 datasets
Motif DE_24h DE_24h-TBX21_MA0690.3 10 bp overlap
Motif DE_48h DE_48h-TBX21_MA0690.3 10 bp overlap
TBX3 2 datasets
Motif DE_24h DE_24h-TBX3_MA1566.3 9 bp overlap
Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap
TBX4 2 datasets
Motif DE_24h DE_24h-TBX4_MA0806.1 8 bp overlap
Motif DE_48h DE_48h-TBX4_MA0806.1 8 bp overlap
TBX5 2 datasets
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
Motif DE_48h DE_48h-TBX5_MA0807.1 8 bp overlap
TGIF1 2 datasets
Motif DE_24h DE_24h-TGIF1_MA0796.1 12 bp overlap
Motif DE_48h DE_48h-TGIF1_MA0796.1 12 bp overlap
TGIF2 2 datasets
Motif DE_24h DE_24h-TGIF2_MA0797.1 12 bp overlap
Motif DE_48h DE_48h-TGIF2_MA0797.1 12 bp overlap
THRB 2 datasets
Motif DE_24h DE_24h-THRB_MA1575.2 17 bp overlap
Motif DE_48h DE_48h-THRB_MA1575.2 17 bp overlap
TP53 1 dataset
ChIP H9_mesoderm GSE142050.TP53.H9_mesoderm 270 bp overlap
TRPS1 1 dataset
Motif DE_24h DE_24h-TRPS1_MA1970.2 8 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 122 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 417 bp overlap
ZNF558 1 dataset
Motif DE_24h DE_24h-ZNF558_MA2335.1 29 bp overlap
ZNF680 2 datasets
Motif DE_24h DE_24h-ZNF680_MA1729.2 11 bp overlap
Motif DE_48h DE_48h-ZNF680_MA1729.2 11 bp overlap