chr3 : 38,601,761 38,602,426
665 bp 48 TFs 4 linked genes
This 665 bp open chromatin element is linked to 4 target genes and is bound by 48 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
SCN5A 47.6 kb Distal Multiome
EXOG 105.8 kb Distal Multiome
ACVR2B 148.2 kb Distal Multiome
XYLB 255.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:38,596,761 – 38,607,426
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
48 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 259 bp overlap
BRD4 3 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 352 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 229 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 481 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 361 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 284 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 251 bp overlap
CTCFL 1 dataset
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 139 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 258 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 336 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 377 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 210 bp overlap
FLI1 4 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 326 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 331 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 213 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 383 bp overlap
GATA3 2 datasets
ChIP Kelly GSE94822.GATA3.Kelly 291 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 186 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 544 bp overlap
ChIP DE DE-GATA4-2 551 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 353 bp overlap
ChIP DE DE-GATA6-2 543 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 401 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 365 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 389 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 524 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 568 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 490 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 347 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 591 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 561 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 430 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 278 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 382 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 273 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 446 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 253 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 466 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 305 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 197 bp overlap
MEF2D 1 dataset
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 224 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 251 bp overlap
MYC 1 dataset
ChIP Kelly GSE138295.MYC.Kelly 297 bp overlap
MYCN 7 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 331 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 665 bp overlap
ChIP IMR-5_CD532 GSE78957.MYCN.IMR-5_CD532 83 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 506 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 490 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 665 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 140 bp overlap
NEUROD1 3 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 419 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 208 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 310 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 220 bp overlap
OTX2 2 datasets
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 450 bp overlap
ChIP retina_pigment GSE60024.OTX2.retina_pigment 323 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 611 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 452 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 607 bp overlap
POU5F1 1 dataset
ChIP SKM-1 GSE93706.POU5F1.SKM-1 188 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 423 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 123 bp overlap
RBM39 1 dataset
ChIP K-562 ENCSR764OXF.RBM39.K-562 161 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 365 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 385 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 547 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 552 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 481 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 339 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 396 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 283 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 451 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 445 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 274 bp overlap
SMC1A-B 1 dataset
ChIP Kelly_shLUC-res GSE115248.SMC1A-B.Kelly_shLUC-res 149 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 219 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 605 bp overlap
STAT1 1 dataset
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 124 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 272 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 346 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 437 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 426 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 426 bp overlap
TFAP2B 2 datasets
ChIP SK-N-SH ENCFF869XXQ 334 bp overlap
ChIP SK-N-SH ENCFF869XXQ 191 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 536 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 207 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 207 bp overlap