chr1 : 55,332,959 55,333,568
609 bp 48 TFs 1 linked gene
This 609 bp open chromatin element is linked to ENSG00000234810 and is bound by 48 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ENSG00000234810 3.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:55,327,959 – 55,338,568
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
48 transcription factors
Source
Cell type
BRD4 3 datasets
ChIP HUVEC-C GSE53998.BRD4.HUVEC-C 609 bp overlap
ChIP HUVEC-C_modETS1 GSE93030.BRD4.HUVEC-C_modETS1 490 bp overlap
ChIP HUVEC-C_modGFP GSE93030.BRD4.HUVEC-C_modGFP 120 bp overlap
CDK8 1 dataset
ChIP SET-2 GSE65138.CDK8.SET-2 213 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 250 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 383 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 509 bp overlap
CTCF 2 datasets
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 277 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 428 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 156 bp overlap
EP300 2 datasets
ChIP pulmonary-artery_endothelial-cell_siCtrl GSE89786.EP300.pulmonary-artery_endothelial-cell_siCtrl 395 bp overlap
ChIP pulmonary-artery_endothelial-cell_siPFKFB3 GSE89786.EP300.pulmonary-artery_endothelial-cell_siPFKFB3 489 bp overlap
ERG 19 datasets
ChIP HAEC GSE89970.ERG.HAEC 151 bp overlap
ChIP HUVEC-C GSE124891.ERG.HUVEC-C 442 bp overlap
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 418 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.ERG.HUVEC-C_VEGF_12h 122 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 310 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 399 bp overlap
ChIP aortic-endothelial-cell_D13 GSE139377.ERG.aortic-endothelial-cell_D13 362 bp overlap
ChIP aortic-endothelial-cell_D16 GSE139377.ERG.aortic-endothelial-cell_D16 350 bp overlap
ChIP aortic-endothelial-cell_D17 GSE139377.ERG.aortic-endothelial-cell_D17 91 bp overlap
ChIP aortic-endothelial-cell_D19 GSE139377.ERG.aortic-endothelial-cell_D19 194 bp overlap
ChIP aortic-endothelial-cell_D24 GSE139377.ERG.aortic-endothelial-cell_D24 300 bp overlap
ChIP aortic-endothelial-cell_D26 GSE139377.ERG.aortic-endothelial-cell_D26 377 bp overlap
ChIP aortic-endothelial-cell_D33 GSE139377.ERG.aortic-endothelial-cell_D33 169 bp overlap
ChIP aortic-endothelial-cell_D39 GSE139377.ERG.aortic-endothelial-cell_D39 232 bp overlap
ChIP aortic-endothelial-cell_D40 GSE139377.ERG.aortic-endothelial-cell_D40 314 bp overlap
ChIP aortic-endothelial-cell_D44 GSE139377.ERG.aortic-endothelial-cell_D44 234 bp overlap
ChIP aortic-endothelial-cell_D49 GSE139377.ERG.aortic-endothelial-cell_D49 348 bp overlap
ChIP aortic-endothelial-cell_D51 GSE139377.ERG.aortic-endothelial-cell_D51 331 bp overlap
ChIP arterial-endothelial-cells GSE128382.ERG.arterial-endothelial-cells 148 bp overlap
ETS1 13 datasets
ChIP HUVEC-C GSE41166.ETS1.HUVEC-C 450 bp overlap
ChIP HUVEC-C GSE109625.ETS1.HUVEC-C 315 bp overlap
ChIP HUVEC-C GSE93030.ETS1.HUVEC-C 315 bp overlap
ChIP HUVEC-C_12h GSE93030.ETS1.HUVEC-C_12h 559 bp overlap
ChIP HUVEC-C_1h GSE93030.ETS1.HUVEC-C_1h 192 bp overlap
ChIP HUVEC-C_4h GSE93030.ETS1.HUVEC-C_4h 298 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 609 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.ETS1.HUVEC-C_VEGF_12h 559 bp overlap
ChIP HUVEC-C_VEGF_1H GSE41166.ETS1.HUVEC-C_VEGF_1H 340 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.ETS1.HUVEC-C_VEGF_1h 192 bp overlap
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 428 bp overlap
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 125 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.ETS1.HUVEC-C_VEGF_4h 298 bp overlap
FLI1 4 datasets
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 448 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.FLI1.HUVEC-C_VEGF_12h 259 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.FLI1.HUVEC-C_VEGF_1h 162 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.FLI1.HUVEC-C_VEGF_4h 148 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 609 bp overlap
ChIP DE DE-FOXA2-2 609 bp overlap
GATA2 4 datasets
ChIP HUVEC-C GSE109625.GATA2.HUVEC-C 203 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 493 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 441 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 407 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 497 bp overlap
ChIP DE DE-GATA4-2 524 bp overlap
ChIP foregut GSE117136.GATA4.foregut 417 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 374 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 440 bp overlap
ChIP DE DE-GATA6-2 534 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 331 bp overlap
ChIP foregut GSE117136.GATA6.foregut 354 bp overlap
HIF1A 1 dataset
ChIP HUVEC-C_HYPOX GSE39089.HIF1A.HUVEC-C_HYPOX 270 bp overlap
HMGB2 1 dataset
ChIP HUVEC-C GSE98245.HMGB2.HUVEC-C 245 bp overlap
KDM1A 1 dataset
ChIP SET-2_GSK GSE121424.KDM1A.SET-2_GSK 114 bp overlap
LMO2 1 dataset
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 281 bp overlap
LYL1 1 dataset
ChIP TSU-1621MT GSE60477.LYL1.TSU-1621MT 231 bp overlap
MAX 1 dataset
ChIP liver ENCSR847DIT.MAX.liver 161 bp overlap
MCM2 1 dataset
ChIP K562 ENCFF897SNA 89 bp overlap
MED1 1 dataset
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 163 bp overlap
MEF2D 2 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 192 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 326 bp overlap
MYC 3 datasets
ChIP PAVE GSE47152.MYC.PAVE 271 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DLU.MYC.endothelial_umbilical-vein 61 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DLU.MYC.endothelial_umbilical-vein 142 bp overlap
NEUROD1 3 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 298 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 264 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 204 bp overlap
NFAT5 1 dataset
ChIP Hep-G2 ENCSR565BVI.NFAT5.Hep-G2 125 bp overlap
NR2F2 6 datasets
ChIP HUVEC-C GSE128382.NR2F2.HUVEC-C 162 bp overlap
ChIP liver ENCFF427MRU 329 bp overlap
ChIP liver ENCFF427MRU 395 bp overlap
ChIP liver ENCFF565JGD 573 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 609 bp overlap
ChIP liver ENCSR338MMB.NR2F2.liver 590 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 230 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 334 bp overlap
PGR 1 dataset
ChIP HUVEC-C_PR_PROGESTERON GSE43786.PGR.HUVEC-C_PR_PROGESTERON 182 bp overlap
POLR2A 5 datasets
ChIP endothelial cell of umbilical vein ENCFF303XUJ 431 bp overlap
ChIP endothelial cell of umbilical vein ENCFF467WJF 474 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 341 bp overlap
ChIP spleen ENCFF044PYR 299 bp overlap
ChIP spleen ENCFF446ZGT 374 bp overlap
PROX1 1 dataset
ChIP HUVEC-C_Prox1OE GSE71230.PROX1.HUVEC-C_Prox1OE 413 bp overlap
RAD21 1 dataset
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 222 bp overlap
RELA 5 datasets
ChIP HUVEC-C_Scr GSE87552.RELA.HUVEC-C_Scr 180 bp overlap
ChIP HUVEC-C_TNF GSE53998.RELA.HUVEC-C_TNF 270 bp overlap
ChIP HUVEC-C_TNF-60min GSE121890.RELA.HUVEC-C_TNF-60min 233 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 312 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 255 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 327 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 427 bp overlap
SMARCA4 4 datasets
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 295 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 609 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 440 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 89 bp overlap
SMARCC1 2 datasets
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 609 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCC1.TTC-1240_SMARCB1-FL 609 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 252 bp overlap
SP1 2 datasets
ChIP liver ENCFF597LFJ 475 bp overlap
ChIP liver ENCFF769YSM 475 bp overlap
STAG2 1 dataset
ChIP HCAEC GSE101921.STAG2.HCAEC 402 bp overlap
TAL1 2 datasets
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 447 bp overlap
ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 262 bp overlap
ZSCAN4 1 dataset
ChIP HEK293 ENCFF381BKT 69 bp overlap