chr3 : 12,425,014 12,425,249
235 bp 59 TFs 0 linked genes
This 235 bp open chromatin element has no linked target genes and is bound by 59 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:12,420,014 – 12,430,249
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
AR 4 datasets
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 161 bp overlap
ChIP MCF-7 ERP001226.AR.MCF-7 121 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 119 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 147 bp overlap
ARID1A 5 datasets
ChIP MCF-7 GSE123284.ARID1A.MCF-7 232 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 235 bp overlap
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 76 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 235 bp overlap
ChIP MCF-7_JQ1 GSE123284.ARID1A.MCF-7_JQ1 235 bp overlap
ATRX 2 datasets
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 235 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 142 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 77 bp overlap
BRD4 2 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 235 bp overlap
ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 131 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 93 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 145 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 218 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 235 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 235 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 235 bp overlap
CSRNP3 1 dataset
ChIP SK-N-SH ENCFF710BXD 98 bp overlap
CTCF 2 datasets
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 198 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 235 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 235 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 181 bp overlap
EP300 3 datasets
ChIP SK-N-SH ENCFF829RWA 92 bp overlap
ChIP SK-N-SH ENCFF829RWA 235 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 126 bp overlap
ESR1 18 datasets
ChIP MCF-7 GSE68355.ESR1.MCF-7 51 bp overlap
ChIP MCF-7 GSE103023.ESR1.MCF-7 87 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 121 bp overlap
ChIP MCF-7 GSE148277.ESR1.MCF-7 127 bp overlap
ChIP MCF-7_D538G GSE148277.ESR1.MCF-7_D538G 124 bp overlap
ChIP MCF-7_D538G_DMSO GSE148277.ESR1.MCF-7_D538G_DMSO 165 bp overlap
ChIP MCF-7_E2+4OHT GSE119702.ESR1.MCF-7_E2+4OHT 87 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 181 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 125 bp overlap
ChIP MCF-7_EtOH GSE136673.ESR1.MCF-7_EtOH 118 bp overlap
ChIP MCF-7_G6274 GSE117941.ESR1.MCF-7_G6274 74 bp overlap
ChIP MCF-7_OHT GSE119702.ESR1.MCF-7_OHT 87 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 116 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 109 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 159 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 181 bp overlap
ChIP MCF-7_Y537S_DMSO GSE148277.ESR1.MCF-7_Y537S_DMSO 197 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 65 bp overlap
FOXA1 22 datasets
ChIP MCF-7 GSE72249.FOXA1.MCF-7 164 bp overlap
ChIP MCF-7 GSE128445.FOXA1.MCF-7 67 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 149 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 121 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 112 bp overlap
ChIP MCF-7 GSE60270.FOXA1.MCF-7 158 bp overlap
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 131 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 178 bp overlap
ChIP MCF-7_DOX-neg GSE124654.FOXA1.MCF-7_DOX-neg 156 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 201 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 140 bp overlap
ChIP MCF-7_E2 GSE59530.FOXA1.MCF-7_E2 125 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 128 bp overlap
ChIP MCF-7_E2_TNF GSE59530.FOXA1.MCF-7_E2_TNF 143 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 98 bp overlap
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 132 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 130 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 224 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 142 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 176 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 107 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 101 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 235 bp overlap
ChIP DE DE-FOXA2-2 235 bp overlap
FOXJ3 2 datasets
ChIP SK-N-SH ENCFF124KVL 83 bp overlap
ChIP SK-N-SH ENCFF124KVL 235 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCFF485YIB 235 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 235 bp overlap
ChIP SK-N-SH ENCFF764OZD 235 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 163 bp overlap
GATA3 10 datasets
ChIP BE2C GSE65664.GATA3.BE2C 212 bp overlap
ChIP MCF-7 ENCFF437NQS 220 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 177 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 185 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 155 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 128 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 124 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 175 bp overlap
ChIP SH-SY5Y ENCFF475HYF 137 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 181 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 235 bp overlap
ChIP DE DE-GATA4-2 235 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 227 bp overlap
ChIP foregut GSE117136.GATA4.foregut 201 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 201 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 206 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 235 bp overlap
ChIP DE DE-GATA6-2 235 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 235 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 235 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 235 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 235 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 235 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 235 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 235 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 190 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 235 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 235 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 144 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 185 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 190 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 127 bp overlap
MAML3 2 datasets
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 130 bp overlap
ChIP SK-N-SH_RA GSE69119.MAML3.SK-N-SH_RA 228 bp overlap
MED1 1 dataset
ChIP RH4 GSE83726.MED1.RH4 180 bp overlap
MEF2D 1 dataset
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 145 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 74 bp overlap
MYCN 4 datasets
ChIP BE2C GSE80151.MYCN.BE2C 85 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 235 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 235 bp overlap
ChIP RH4 GSE83726.MYCN.RH4 141 bp overlap
NR3C1 1 dataset
ChIP MCF-7_ICI_Dex GSE81510.NR3C1.MCF-7_ICI_Dex 198 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 235 bp overlap
PCBP2 2 datasets
ChIP Hep-G2 GSE120104.PCBP2.Hep-G2 62 bp overlap
ChIP Hep-G2 ENCSR945NSF.PCBP2.Hep-G2 62 bp overlap
PGR 1 dataset
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 235 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 177 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 235 bp overlap
RARA 1 dataset
ChIP SK-N-SH GSE69119.RARA.SK-N-SH 99 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 139 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 217 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 235 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 235 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 235 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 235 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 235 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 235 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 235 bp overlap
SMAD3 2 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 179 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 228 bp overlap
SMARCA4 5 datasets
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 194 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 90 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_4-OHT_clone14 235 bp overlap
ChIP MCF-7_ARID1A-KO_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_clone14 235 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 235 bp overlap
SMARCB1 3 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 129 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 178 bp overlap
ChIP MCF-7_JQ1 GSE123284.SMARCB1.MCF-7_JQ1 127 bp overlap
SNAI2 2 datasets
ChIP SK-N-SH ENCFF449PID 211 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 69 bp overlap
STAG2 1 dataset
ChIP HCAEC GSE101921.STAG2.HCAEC 136 bp overlap
STAT3 5 datasets
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 172 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 123 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 127 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 156 bp overlap
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 106 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 144 bp overlap
TEAD4 3 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 158 bp overlap
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 235 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 158 bp overlap
TFAP2A 1 dataset
ChIP MCF-7_E2 GSE60270.TFAP2A.MCF-7_E2 202 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 222 bp overlap
TFAP2C 2 datasets
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 159 bp overlap
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 69 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 164 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 196 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 235 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 65 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 65 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 235 bp overlap
ZFP57 1 dataset
ChIP hESC GSE115387.ZFP57.hESC 50 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 63 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 102 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 179 bp overlap